c2pfam

AT5G50280.1 :

Domain Description Evalue Bits GA Start End
PPR_long Pentacotripeptide-repeat region of PRORP 8.4E-06 15 27.00 224 343
PPR_1 PPR repeat 0.0013 8 23.80 271 299
PPR_3 Pentatricopeptide repeat domain 0.016 5 25.00 272 317
PPR_2 PPR repeat family 5.2E-12 36 30.00 272 318
PPR PPR repeat 5.2E-05 13 25.00 276 303
Phage_ABA_S Phage ABA sandwich domain 0.0062 7 27.00 286 304
PPR_3 Pentatricopeptide repeat domain 1.6E-05 15 25.00 296 354
PPR_1 PPR repeat 0.73 0 23.80 304 323
PPR_long Pentacotripeptide-repeat region of PRORP 1.5E-05 14 27.00 324 396
PPR_2 PPR repeat family 0.00025 11 30.00 325 355
PPR PPR repeat 0.012 6 25.00 326 340
Phage_ABA_S Phage ABA sandwich domain 0.075 4 27.00 326 347
S-layer S-layer protein 9.1E-05 11 30.00 336 386
PPR_1 PPR repeat 0.0037 7 23.80 346 371
PPR PPR repeat 0.00039 11 25.00 347 375
PPR_2 PPR repeat family 0.00035 11 30.00 350 379
PPR_long Pentacotripeptide-repeat region of PRORP 9.4E-14 41 27.00 362 506
PPR_3 Pentatricopeptide repeat domain 4.8E-14 42 25.00 366 425
PPR_1 PPR repeat 4E-06 16 23.80 373 406
PPR_2 PPR repeat family 3E-17 53 30.00 378 426
Clathrin Region in Clathrin and VPS 0.00042 10 23.60 378 439
Mtf2 Mtf2 family 4.6E-06 16 27.00 378 429
PPR PPR repeat 1.2E-09 28 25.00 381 410
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.015 6 26.10 383 423
BKACE beta-keto acid cleavage enzyme 0.015 4 24.80 390 421
BKACE beta-keto acid cleavage enzyme 0.012 5 24.80 392 424
bacHORMA_2 Bacterial HORMA domain 2 0.11 2 27.30 399 425
PPR_1 PPR repeat 2.8E-06 17 23.80 408 441
PPR PPR repeat 8.4E-08 22 25.00 416 445
PPR_2 PPR repeat family 5.4E-12 36 30.00 416 459
PPR_3 Pentatricopeptide repeat domain 9.8E-15 44 25.00 436 495
PPR_1 PPR repeat 6.9E-05 12 23.80 444 461
PPR_2 PPR repeat family 2.3E-13 40 30.00 447 495
PPR PPR repeat 0.00036 11 25.00 451 479
PPR_long Pentacotripeptide-repeat region of PRORP 4.2E-11 32 27.00 467 569
bacHORMA_2 Bacterial HORMA domain 2 0.0027 7 27.30 475 522
PPR_1 PPR repeat 3.9E-05 13 23.80 480 511
PPR_2 PPR repeat family 3.6E-13 39 30.00 486 530
PPR PPR repeat 5E-09 26 25.00 487 516
Clathrin Region in Clathrin and VPS 0.56 0 23.60 491 544
RPM2 Mitochondrial ribonuclease P subunit (RPM2) 0.02 5 26.10 505 532
PPR_3 Pentatricopeptide repeat domain 4.3E-14 42 25.00 508 565
PPR_1 PPR repeat 0.00083 9 23.80 515 535
PPR PPR repeat 8.6E-06 16 25.00 522 550
PPR_1 PPR repeat 2.2E-06 17 23.80 554 580
PMBR Pseudomurein-binding repeat 0.11 3 24.90 554 572
PPR_3 Pentatricopeptide repeat domain 1.4E-10 31 25.00 556 600
PPR PPR repeat 4.9E-08 23 25.00 556 585
PPR_2 PPR repeat family 3.3E-13 40 30.00 556 602
bacHORMA_2 Bacterial HORMA domain 2 0.8 -1 27.30 570 598
PPR_long Pentacotripeptide-repeat region of PRORP 8.5E-07 18 27.00 577 666
PPR_1 PPR repeat 8.5E-06 15 23.80 584 604
BKACE beta-keto acid cleavage enzyme 0.056 2 24.80 588 633
Mtf2 Mtf2 family 0.028 4 27.00 589 629
PPR_2 PPR repeat family 2.4E-11 34 30.00 590 636
PPR PPR repeat 8.2E-05 13 25.00 592 617
PPR_3 Pentatricopeptide repeat domain 1.2E-06 18 25.00 612 655
PPR_1 PPR repeat 1.5E-05 15 23.80 620 644
PPR_2 PPR repeat family 1.4E-07 22 30.00 623 663
PMBR Pseudomurein-binding repeat 0.0019 8 24.90 624 643
PPR PPR repeat 1.1E-06 19 25.00 626 655

723

PPR_long
PPR_1
PPR_3
PPR_2
PPR
Phage_ABA_S
PPR_3
PPR_1
PPR_long
PPR_2
PPR
Phage_ABA_S
S-layer
PPR_1
PPR
PPR_2
PPR_long
PPR_3
PPR_1
PPR_2
Clathrin
Mtf2
PPR
RPM2
BKACE
BKACE
bacHORMA_2
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR_long
bacHORMA_2
PPR_1
PPR_2
PPR
Clathrin
RPM2
PPR_3
PPR_1
PPR
PPR_1
PMBR
PPR_3
PPR
PPR_2
bacHORMA_2
PPR_long
PPR_1
BKACE
Mtf2
PPR_2
PPR
PPR_3
PPR_1
PPR_2
PMBR
PPR

References:

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

PPR_long

PPR_3

PPR_2

PPR_1

RPM2
1409716 A 105-kDa protein is required for yeast mitochondrial RNase P activity. Proc Natl Acad Sci U S A. 1992;89:9875-9879.
16024791 Rpm2p, a component of yeast mitochondrial RNase P, acts as a transcriptional activator in the nucleus. Mol Cell Biol. 2005;25:6546-6558.

PMBR

S-layer

Phage_ABA_S

Mtf2

bacHORMA_2

BKACE

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_long	Pentacotripeptide-repeat region of PRORP	8.4E-06	15	27.00	224	343
PPR_1	PPR repeat	0.0013	8	23.80	271	299
PPR_3	Pentatricopeptide repeat domain	0.016	5	25.00	272	317
PPR_2	PPR repeat family	5.2E-12	36	30.00	272	318
PPR	PPR repeat	5.2E-05	13	25.00	276	303
Phage_ABA_S	Phage ABA sandwich domain	0.0062	7	27.00	286	304
PPR_3	Pentatricopeptide repeat domain	1.6E-05	15	25.00	296	354
PPR_1	PPR repeat	0.73	0	23.80	304	323
PPR_long	Pentacotripeptide-repeat region of PRORP	1.5E-05	14	27.00	324	396
PPR_2	PPR repeat family	0.00025	11	30.00	325	355
PPR	PPR repeat	0.012	6	25.00	326	340
Phage_ABA_S	Phage ABA sandwich domain	0.075	4	27.00	326	347
S-layer	S-layer protein	9.1E-05	11	30.00	336	386
PPR_1	PPR repeat	0.0037	7	23.80	346	371
PPR	PPR repeat	0.00039	11	25.00	347	375
PPR_2	PPR repeat family	0.00035	11	30.00	350	379
PPR_long	Pentacotripeptide-repeat region of PRORP	9.4E-14	41	27.00	362	506
PPR_3	Pentatricopeptide repeat domain	4.8E-14	42	25.00	366	425
PPR_1	PPR repeat	4E-06	16	23.80	373	406
PPR_2	PPR repeat family	3E-17	53	30.00	378	426
Clathrin	Region in Clathrin and VPS	0.00042	10	23.60	378	439
Mtf2	Mtf2 family	4.6E-06	16	27.00	378	429
PPR	PPR repeat	1.2E-09	28	25.00	381	410
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.015	6	26.10	383	423
BKACE	beta-keto acid cleavage enzyme	0.015	4	24.80	390	421
BKACE	beta-keto acid cleavage enzyme	0.012	5	24.80	392	424
bacHORMA_2	Bacterial HORMA domain 2	0.11	2	27.30	399	425
PPR_1	PPR repeat	2.8E-06	17	23.80	408	441
PPR	PPR repeat	8.4E-08	22	25.00	416	445
PPR_2	PPR repeat family	5.4E-12	36	30.00	416	459
PPR_3	Pentatricopeptide repeat domain	9.8E-15	44	25.00	436	495
PPR_1	PPR repeat	6.9E-05	12	23.80	444	461
PPR_2	PPR repeat family	2.3E-13	40	30.00	447	495
PPR	PPR repeat	0.00036	11	25.00	451	479
PPR_long	Pentacotripeptide-repeat region of PRORP	4.2E-11	32	27.00	467	569
bacHORMA_2	Bacterial HORMA domain 2	0.0027	7	27.30	475	522
PPR_1	PPR repeat	3.9E-05	13	23.80	480	511
PPR_2	PPR repeat family	3.6E-13	39	30.00	486	530
PPR	PPR repeat	5E-09	26	25.00	487	516
Clathrin	Region in Clathrin and VPS	0.56	0	23.60	491	544
RPM2	Mitochondrial ribonuclease P subunit (RPM2)	0.02	5	26.10	505	532
PPR_3	Pentatricopeptide repeat domain	4.3E-14	42	25.00	508	565
PPR_1	PPR repeat	0.00083	9	23.80	515	535
PPR	PPR repeat	8.6E-06	16	25.00	522	550
PPR_1	PPR repeat	2.2E-06	17	23.80	554	580
PMBR	Pseudomurein-binding repeat	0.11	3	24.90	554	572
PPR_3	Pentatricopeptide repeat domain	1.4E-10	31	25.00	556	600
PPR	PPR repeat	4.9E-08	23	25.00	556	585
PPR_2	PPR repeat family	3.3E-13	40	30.00	556	602
bacHORMA_2	Bacterial HORMA domain 2	0.8	-1	27.30	570	598
PPR_long	Pentacotripeptide-repeat region of PRORP	8.5E-07	18	27.00	577	666
PPR_1	PPR repeat	8.5E-06	15	23.80	584	604
BKACE	beta-keto acid cleavage enzyme	0.056	2	24.80	588	633
Mtf2	Mtf2 family	0.028	4	27.00	589	629
PPR_2	PPR repeat family	2.4E-11	34	30.00	590	636
PPR	PPR repeat	8.2E-05	13	25.00	592	617
PPR_3	Pentatricopeptide repeat domain	1.2E-06	18	25.00	612	655
PPR_1	PPR repeat	1.5E-05	15	23.80	620	644
PPR_2	PPR repeat family	1.4E-07	22	30.00	623	663
PMBR	Pseudomurein-binding repeat	0.0019	8	24.90	624	643
PPR	PPR repeat	1.1E-06	19	25.00	626	655