c2pfam

AT5G50920.1 :

Domain Description Evalue Bits GA Start End
DUF815 Protein of unknown function (DUF815) 1 0 20.10 84 116
Clp_N Clp amino terminal domain 5.5E-20 63 20.70 109 161
Clp_N Clp amino terminal domain 3.6E-21 67 20.70 185 236
AAA_16 AAA ATPase domain 1.8E-07 23 32.60 276 321
Sigma54_activat Sigma-54 interaction domain 0.00096 10 20.20 277 378
ResIII Type III restriction enzyme, res subunit 0.12 4 20.90 281 320
VirE Virulence-associated protein E 0.021 6 21.50 283 333
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.0089 8 26.60 284 320
DUF815 Protein of unknown function (DUF815) 0.34 1 20.10 288 321
RsgA_GTPase RsgA GTPase 0.054 5 30.00 290 318
IstB_IS21 IstB-like ATP binding protein 0.0012 10 24.10 293 320
AAA_22 AAA domain 0.00022 13 27.00 294 379
Mg_chelatase Magnesium chelatase, subunit ChlI 0.0014 10 20.30 295 336
AAA_7 P-loop containing dynein motor region 0.013 7 25.80 295 320
AAA_29 P-loop containing region of AAA domain 0.31 2 27.00 296 311
AAA_24 AAA domain 0.0088 7 27.00 297 318
AAA_28 AAA domain 0.014 7 27.00 299 320
Roc Ras of Complex, Roc, domain of DAPkinase 0.0057 8 27.00 299 328
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.029 6 20.00 299 319
AAA_18 AAA domain 0.00032 13 29.40 299 368
RNA_helicase RNA helicase 0.0027 10 21.50 299 321
NACHT NACHT domain 4.7E-05 15 20.40 299 326
AAA_2 AAA domain (Cdc48 subfamily) 0.0045 9 20.60 299 375
AAA ATPase family associated with various cellular activities (AAA) 1E-16 53 20.80 299 415
AAA_5 AAA domain (dynein-related subfamily) 2.2E-07 23 20.80 299 377
MMR_HSR1 GTPase of unknown function 0.064 5 24.50 299 327
TIP49 TIP49 C-terminus 0.0036 8 23.80 300 336
NTPase_1 NTPase 0.024 6 23.90 300 324
AAA_14 AAA domain 0.00041 12 27.00 300 380
AAA_25 AAA domain 7E-05 14 27.00 300 375
ABC_tran ABC transporter 0.13 4 23.10 300 329
AAA_33 AAA domain 0.019 7 27.00 300 319
Zeta_toxin Zeta toxin 0.083 4 20.10 300 320
AAA_3 ATPase family associated with various cellular activities (AAA) 0.13 4 21.10 301 320
CbiA CobQ/CobB/MinD/ParA nucleotide binding domain 0.35 3 21.70 305 321
TniB Bacterial TniB protein 5E-07 21 20.10 339 435
TIP49 TIP49 C-terminus 1 0 23.80 346 378
AAA_16 AAA ATPase domain 0.69 2 32.60 351 377
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.11 4 20.00 355 378
ResIII Type III restriction enzyme, res subunit 0.19 3 20.90 356 383
VirE Virulence-associated protein E 0.29 2 21.50 417 439
AAA_lid_9 AAA lid domain 6.5E-37 117 22.80 437 538
Takusan Takusan 0.00031 12 28.00 498 538
Uso1_p115_C Uso1 / p115 like vesicle tethering protein, C terminal region 0.0016 10 22.20 499 564
UVR UvrB/uvrC motif 1.4E-09 29 20.50 511 545
Torsin Torsin 0.00012 14 20.90 597 663
DUF815 Protein of unknown function (DUF815) 0.0037 8 20.10 602 684
TIP49 TIP49 C-terminus 0.41 1 23.80 607 660
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.006 8 20.00 609 660
AAA_16 AAA ATPase domain 0.00017 13 32.60 611 663
Sigma54_activat Sigma-54 interaction domain 2.6E-08 25 20.20 611 742
ResIII Type III restriction enzyme, res subunit 0.0037 9 20.90 613 666
T2SSE Type II/IV secretion system protein 0.00033 11 24.90 618 714
Zeta_toxin Zeta toxin 0.00018 12 20.10 632 681
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.03 6 26.60 633 661
DNA_pol3_delta2 DNA polymerase III, delta subunit 0.0019 10 27.00 635 667
AAA_2 AAA domain (Cdc48 subfamily) 0 187 20.60 636 810
VirE Virulence-associated protein E 0.0052 8 21.50 639 666
RsgA_GTPase RsgA GTPase 0.0026 9 30.00 640 659
AAA_7 P-loop containing dynein motor region 0.017 6 25.80 640 687
Mg_chelatase Magnesium chelatase, subunit ChlI 0.018 6 20.30 640 660
IstB_IS21 IstB-like ATP binding protein 0.0015 10 24.10 641 660
AAA_5 AAA domain (dynein-related subfamily) 2.4E-14 45 20.80 641 762
AAA_28 AAA domain 0.0041 9 27.00 641 661
AAA_29 P-loop containing region of AAA domain 0.019 6 27.00 641 660
AAA_23 AAA domain 0.00023 13 27.00 641 843
NTPase_1 NTPase 0.23 3 23.90 642 659
MMR_HSR1 GTPase of unknown function 0.15 4 24.50 642 659
AAA_33 AAA domain 0.0073 8 27.00 642 682
CbiA CobQ/CobB/MinD/ParA nucleotide binding domain 0.19 3 21.70 642 662
AAA ATPase family associated with various cellular activities (AAA) 5.3E-10 31 20.80 642 762
AAA_14 AAA domain 0.00085 11 27.00 642 737
RNA_helicase RNA helicase 0.0019 10 21.50 642 661
AAA_25 AAA domain 0.099 4 27.00 642 661
NACHT NACHT domain 0.083 4 20.40 642 660
AAA_22 AAA domain 0.0073 8 27.00 642 662
AAA_18 AAA domain 0.0014 11 29.40 643 660
Roc Ras of Complex, Roc, domain of DAPkinase 0.16 4 27.00 643 674
ABC_tran ABC transporter 0.0045 9 23.10 643 677
AAA_24 AAA domain 0.0062 8 27.00 644 735
DNA_pol3_delta2 DNA polymerase III, delta subunit 0.23 3 27.00 710 736
Mg_chelatase Magnesium chelatase, subunit ChlI 0.11 3 20.30 711 759
AAA_3 ATPase family associated with various cellular activities (AAA) 0.0024 9 21.10 712 758
CbiA CobQ/CobB/MinD/ParA nucleotide binding domain 0.35 3 21.70 759 881
TIP49 TIP49 C-terminus 0.14 3 23.80 814 908
ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 6.6E-26 82 21.40 817 897

929

DUF815
Clp_N
Clp_N
AAA_16
Sigma54_activat
ResIII
VirE
TsaE
DUF815
RsgA_GTPase
IstB_IS21
AAA_22
Mg_chelatase
AAA_7
AAA_29
AAA_24
AAA_28
Roc
RuvB_N
AAA_18
RNA_helicase
NACHT
AAA_2
AAA
AAA_5
MMR_HSR1
TIP49
NTPase_1
AAA_14
AAA_25
ABC_tran
AAA_33
Zeta_toxin
AAA_3
CbiA
TniB
TIP49
AAA_16
RuvB_N
ResIII
VirE
AAA_lid_9
Takusan
Uso1_p115_C
UVR
Torsin
DUF815
TIP49
RuvB_N
AAA_16
Sigma54_activat
ResIII
T2SSE
Zeta_toxin
TsaE
DNA_pol3_delta2
AAA_2
VirE
RsgA_GTPase
AAA_7
Mg_chelatase
IstB_IS21
AAA_5
AAA_28
AAA_29
AAA_23
NTPase_1
MMR_HSR1
AAA_33
CbiA
AAA
AAA_14
RNA_helicase
AAA_25
NACHT
AAA_22
AAA_18
Roc
ABC_tran
AAA_24
DNA_pol3_delta2
Mg_chelatase
AAA_3
CbiA
TIP49
ClpB_D2-small

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_3
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

DNA_pol3_delta2

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

TniB
8195081 Transposon Tn5090 of plasmid R751, which carries an integron, is related to Tn7, Mu, and the retroelements. J Bacteriol 1994;176:3257-3268.
8594337 Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron. Mol Microbiol 1995;17:1189-1200.

TsaE

UVR

ClpB_D2-small
14567920 The structure of ClpB: a molecular chaperone that rescues proteins from an aggregated state. Cell. 2003;115:229-240.

ResIII

IstB_IS21

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

CbiA
9742225 Cobalamin (vitamin B12) biosynthesis: identification and characterization of a Bacillus megaterium cobI operon. Biochem J 1998;335:159-166.
9742226 Cobalamin (vitamin B12) biosynthesis: functional characterization of the Bacillus megaterium cbi genes required to convert uroporphyrinogen III into cobyrinic acid a,c-diamide. Biochem J 1998;335:167-173.
7635831 Identification and sequence analysis of genes involved in late steps in cobalamin (vitamin B12) synthesis in Rhodobacter capsulatus. J Bacteriol 1995;177:4481-4487.
8501034 Characterization of the cobalamin (vitamin B12) biosynthetic genes of Salmonella typhimurium. J Bacteriol 1993;175:3303-3316.
10966576 The synthetase domains of cobalamin biosynthesis amidotransferases cobB and cobQ belong to a new family of ATP-dependent amidoligases, related to dethiobiotin synthetase. Proteins 2000;41:238-247.
2149583 A family of ATPases involved in active partitioning of diverse bacterial plasmids. Mol Microbiol 1990;4:1455-1463.

VirE

NTPase_1

Clp_N
10982797 Structure and activity of ClpB from Escherichia coli. Role of the amino-and -carboxyl-terminal domains. J Biol Chem 2000;275:37565-37571.

DUF815

Uso1_p115_C
11927603 Sequential tethering of Golgins and catalysis of SNAREpin assembly by the vesicle-tethering protein p115. J Cell Biol 2002;157:45-62.
12077354 Vesicle tethering complexes in membrane traffic. J Cell Sci 2002;115:2627-2637.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

AAA_7

Roc

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_33

AAA_23

AAA_29

AAA_28

Sigma54_activat
11544185 Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev 2001;15:2282-2294.
12618438 Domain Architectures of sigma(54)-Dependent Transcriptional Activators. J Bacteriol 2003;185:1757-1767.

AAA_25

AAA_24

T2SSE

AAA_22

AAA_18

AAA_16

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA_lid_9

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

Torsin
12554684 Suppression of polyglutamine-induced protein aggregation in Caenorhabditis elegans by torsin proteins. Hum Mol Genet 2003;12:307-319.

AAA_14

Takusan

RsgA_GTPase

Domain	Description	Evalue	Bits	GA	Start	End
DUF815	Protein of unknown function (DUF815)	1	0	20.10	84	116
Clp_N	Clp amino terminal domain	5.5E-20	63	20.70	109	161
Clp_N	Clp amino terminal domain	3.6E-21	67	20.70	185	236
AAA_16	AAA ATPase domain	1.8E-07	23	32.60	276	321
Sigma54_activat	Sigma-54 interaction domain	0.00096	10	20.20	277	378
ResIII	Type III restriction enzyme, res subunit	0.12	4	20.90	281	320
VirE	Virulence-associated protein E	0.021	6	21.50	283	333
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.0089	8	26.60	284	320
DUF815	Protein of unknown function (DUF815)	0.34	1	20.10	288	321
RsgA_GTPase	RsgA GTPase	0.054	5	30.00	290	318
IstB_IS21	IstB-like ATP binding protein	0.0012	10	24.10	293	320
AAA_22	AAA domain	0.00022	13	27.00	294	379
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.0014	10	20.30	295	336
AAA_7	P-loop containing dynein motor region	0.013	7	25.80	295	320
AAA_29	P-loop containing region of AAA domain	0.31	2	27.00	296	311
AAA_24	AAA domain	0.0088	7	27.00	297	318
AAA_28	AAA domain	0.014	7	27.00	299	320
Roc	Ras of Complex, Roc, domain of DAPkinase	0.0057	8	27.00	299	328
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.029	6	20.00	299	319
AAA_18	AAA domain	0.00032	13	29.40	299	368
RNA_helicase	RNA helicase	0.0027	10	21.50	299	321
NACHT	NACHT domain	4.7E-05	15	20.40	299	326
AAA_2	AAA domain (Cdc48 subfamily)	0.0045	9	20.60	299	375
AAA	ATPase family associated with various cellular activities (AAA)	1E-16	53	20.80	299	415
AAA_5	AAA domain (dynein-related subfamily)	2.2E-07	23	20.80	299	377
MMR_HSR1	GTPase of unknown function	0.064	5	24.50	299	327
TIP49	TIP49 C-terminus	0.0036	8	23.80	300	336
NTPase_1	NTPase	0.024	6	23.90	300	324
AAA_14	AAA domain	0.00041	12	27.00	300	380
AAA_25	AAA domain	7E-05	14	27.00	300	375
ABC_tran	ABC transporter	0.13	4	23.10	300	329
AAA_33	AAA domain	0.019	7	27.00	300	319
Zeta_toxin	Zeta toxin	0.083	4	20.10	300	320
AAA_3	ATPase family associated with various cellular activities (AAA)	0.13	4	21.10	301	320
CbiA	CobQ/CobB/MinD/ParA nucleotide binding domain	0.35	3	21.70	305	321
TniB	Bacterial TniB protein	5E-07	21	20.10	339	435
TIP49	TIP49 C-terminus	1	0	23.80	346	378
AAA_16	AAA ATPase domain	0.69	2	32.60	351	377
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.11	4	20.00	355	378
ResIII	Type III restriction enzyme, res subunit	0.19	3	20.90	356	383
VirE	Virulence-associated protein E	0.29	2	21.50	417	439
AAA_lid_9	AAA lid domain	6.5E-37	117	22.80	437	538
Takusan	Takusan	0.00031	12	28.00	498	538
Uso1_p115_C	Uso1 / p115 like vesicle tethering protein, C terminal region	0.0016	10	22.20	499	564
UVR	UvrB/uvrC motif	1.4E-09	29	20.50	511	545
Torsin	Torsin	0.00012	14	20.90	597	663
DUF815	Protein of unknown function (DUF815)	0.0037	8	20.10	602	684
TIP49	TIP49 C-terminus	0.41	1	23.80	607	660
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.006	8	20.00	609	660
AAA_16	AAA ATPase domain	0.00017	13	32.60	611	663
Sigma54_activat	Sigma-54 interaction domain	2.6E-08	25	20.20	611	742
ResIII	Type III restriction enzyme, res subunit	0.0037	9	20.90	613	666
T2SSE	Type II/IV secretion system protein	0.00033	11	24.90	618	714
Zeta_toxin	Zeta toxin	0.00018	12	20.10	632	681
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.03	6	26.60	633	661
DNA_pol3_delta2	DNA polymerase III, delta subunit	0.0019	10	27.00	635	667
AAA_2	AAA domain (Cdc48 subfamily)	0	187	20.60	636	810
VirE	Virulence-associated protein E	0.0052	8	21.50	639	666
RsgA_GTPase	RsgA GTPase	0.0026	9	30.00	640	659
AAA_7	P-loop containing dynein motor region	0.017	6	25.80	640	687
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.018	6	20.30	640	660
IstB_IS21	IstB-like ATP binding protein	0.0015	10	24.10	641	660
AAA_5	AAA domain (dynein-related subfamily)	2.4E-14	45	20.80	641	762
AAA_28	AAA domain	0.0041	9	27.00	641	661
AAA_29	P-loop containing region of AAA domain	0.019	6	27.00	641	660
AAA_23	AAA domain	0.00023	13	27.00	641	843
NTPase_1	NTPase	0.23	3	23.90	642	659
MMR_HSR1	GTPase of unknown function	0.15	4	24.50	642	659
AAA_33	AAA domain	0.0073	8	27.00	642	682
CbiA	CobQ/CobB/MinD/ParA nucleotide binding domain	0.19	3	21.70	642	662
AAA	ATPase family associated with various cellular activities (AAA)	5.3E-10	31	20.80	642	762
AAA_14	AAA domain	0.00085	11	27.00	642	737
RNA_helicase	RNA helicase	0.0019	10	21.50	642	661
AAA_25	AAA domain	0.099	4	27.00	642	661
NACHT	NACHT domain	0.083	4	20.40	642	660
AAA_22	AAA domain	0.0073	8	27.00	642	662
AAA_18	AAA domain	0.0014	11	29.40	643	660
Roc	Ras of Complex, Roc, domain of DAPkinase	0.16	4	27.00	643	674
ABC_tran	ABC transporter	0.0045	9	23.10	643	677
AAA_24	AAA domain	0.0062	8	27.00	644	735
DNA_pol3_delta2	DNA polymerase III, delta subunit	0.23	3	27.00	710	736
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.11	3	20.30	711	759
AAA_3	ATPase family associated with various cellular activities (AAA)	0.0024	9	21.10	712	758
CbiA	CobQ/CobB/MinD/ParA nucleotide binding domain	0.35	3	21.70	759	881
TIP49	TIP49 C-terminus	0.14	3	23.80	814	908
ClpB_D2-small	C-terminal, D2-small domain, of ClpB protein	6.6E-26	82	21.40	817	897