c2pfam

AT5G51070.1 :

Domain Description Evalue Bits GA Start End
Clp_N Clp amino terminal domain 7.6E-11 33 20.70 95 143
Clp_N Clp amino terminal domain 2.4E-12 38 20.70 179 227
AAA_16 AAA ATPase domain 2.9E-07 22 32.60 290 336
Sigma54_activat Sigma-54 interaction domain 0.0011 10 20.20 291 392
ATPase_2 ATPase domain predominantly from Archaea 0.0078 7 33.20 293 326
NB-ARC NB-ARC domain 0.0033 8 23.50 293 327
IstB_IS21 IstB-like ATP binding protein 0.00021 12 24.10 295 336
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.0038 8 26.60 295 344
Mg_chelatase Magnesium chelatase, subunit ChlI 0.0025 8 20.30 296 350
PhoH PhoH-like protein 0.0025 8 20.10 298 337
TIP49 TIP49 C-terminus 0.01 6 23.80 299 344
AAA_7 P-loop containing dynein motor region 0.0073 7 25.80 305 331
ResIII Type III restriction enzyme, res subunit 1 0 20.90 307 334
RsgA_GTPase RsgA GTPase 0.035 5 30.00 307 330
AAA_22 AAA domain 0.0029 9 27.00 308 393
AAA_2 AAA domain (Cdc48 subfamily) 0.033 5 20.60 311 421
AAA ATPase family associated with various cellular activities (AAA) 4.8E-12 38 20.80 313 422
AAA_5 AAA domain (dynein-related subfamily) 0.00028 12 20.80 313 391
AAA_18 AAA domain 0.058 5 29.40 313 332
Roc Ras of Complex, Roc, domain of DAPkinase 0.031 6 27.00 313 328
NACHT NACHT domain 0.00028 12 20.40 313 340
AAA_25 AAA domain 0.001 10 27.00 313 379
ABC_tran ABC transporter 0.69 2 23.10 313 329
AAA_24 AAA domain 0.17 3 27.00 313 329
AAA_33 AAA domain 0.78 1 27.00 314 330
RNA_helicase RNA helicase 0.027 6 21.50 314 337
AAA_14 AAA domain 0.012 7 27.00 319 393
ATPase_2 ATPase domain predominantly from Archaea 0.0039 8 33.20 362 394
AAA_16 AAA ATPase domain 0.97 1 32.60 364 390
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.038 5 20.00 367 392
ResIII Type III restriction enzyme, res subunit 1 0 20.90 375 394
AAA_lid_9 AAA lid domain 8.7E-32 100 22.80 456 560
Torsin Torsin 0.00021 13 20.90 618 683
TIP49 TIP49 C-terminus 0.15 2 23.80 628 680
AAA_16 AAA ATPase domain 0.00018 13 32.60 628 681
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.002 9 20.00 630 680
ResIII Type III restriction enzyme, res subunit 0.0014 10 20.90 632 685
Zeta_toxin Zeta toxin 0.00032 11 20.10 652 700
AAA_2 AAA domain (Cdc48 subfamily) 0 177 20.60 655 831
NB-ARC NB-ARC domain 0.13 2 23.50 657 679
T2SSE Type II/IV secretion system protein 0.00064 10 24.90 657 758
Sigma54_activat Sigma-54 interaction domain 3.2E-06 18 20.20 658 776
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.0017 9 26.60 658 680
AAA_7 P-loop containing dynein motor region 6.8E-05 14 25.80 659 707
IstB_IS21 IstB-like ATP binding protein 0.00072 10 24.10 659 688
RsgA_GTPase RsgA GTPase 0.0019 9 30.00 659 680
Roc Ras of Complex, Roc, domain of DAPkinase 0.0024 9 27.00 660 692
AAA_25 AAA domain 0.027 5 27.00 660 682
NACHT NACHT domain 0.27 2 20.40 660 679
Mg_chelatase Magnesium chelatase, subunit ChlI 0.023 5 20.30 660 679
AAA_24 AAA domain 0.0039 8 27.00 660 743
AAA_22 AAA domain 6.6E-05 14 27.00 660 772
AAA_5 AAA domain (dynein-related subfamily) 3.5E-14 44 20.80 660 780
AAA ATPase family associated with various cellular activities (AAA) 3.7E-09 28 20.80 660 778
AAA_14 AAA domain 0.00017 13 27.00 661 756
RNA_helicase RNA helicase 0.0011 11 21.50 661 681
AAA_18 AAA domain 0.00017 13 29.40 661 681
ABC_tran ABC transporter 0.003 9 23.10 661 688
PhoH PhoH-like protein 0.025 5 20.10 661 684
AAA_33 AAA domain 0.00094 10 27.00 661 701
ATPase_2 ATPase domain predominantly from Archaea 0.1 4 33.20 663 683
ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 2E-25 80 21.40 837 915

945

Clp_N
Clp_N
AAA_16
Sigma54_activat
ATPase_2
NB-ARC
IstB_IS21
TsaE
Mg_chelatase
PhoH
TIP49
AAA_7
ResIII
RsgA_GTPase
AAA_22
AAA_2
AAA
AAA_5
AAA_18
Roc
NACHT
AAA_25
ABC_tran
AAA_24
AAA_33
RNA_helicase
AAA_14
ATPase_2
AAA_16
RuvB_N
ResIII
AAA_lid_9
Torsin
TIP49
AAA_16
RuvB_N
ResIII
Zeta_toxin
AAA_2
NB-ARC
T2SSE
Sigma54_activat
TsaE
AAA_7
IstB_IS21
RsgA_GTPase
Roc
AAA_25
NACHT
Mg_chelatase
AAA_24
AAA_22
AAA_5
AAA
AAA_14
RNA_helicase
AAA_18
ABC_tran
PhoH
AAA_33
ATPase_2
ClpB_D2-small

References:

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

TsaE

PhoH
8444794 Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J Bacteriol 1993;175:1316-1324.

ResIII

IstB_IS21

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

ATPase_2

AAA_24

Clp_N
10982797 Structure and activity of ClpB from Escherichia coli. Role of the amino-and -carboxyl-terminal domains. J Biol Chem 2000;275:37565-37571.

ClpB_D2-small
14567920 The structure of ClpB: a molecular chaperone that rescues proteins from an aggregated state. Cell. 2003;115:229-240.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

AAA_7

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_33

Sigma54_activat
11544185 Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev 2001;15:2282-2294.
12618438 Domain Architectures of sigma(54)-Dependent Transcriptional Activators. J Bacteriol 2003;185:1757-1767.

AAA_25

Roc

T2SSE

AAA_22

AAA_18

AAA_16

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

AAA_lid_9

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

Torsin
12554684 Suppression of polyglutamine-induced protein aggregation in Caenorhabditis elegans by torsin proteins. Hum Mol Genet 2003;12:307-319.

AAA_14

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

RsgA_GTPase

Domain	Description	Evalue	Bits	GA	Start	End
Clp_N	Clp amino terminal domain	7.6E-11	33	20.70	95	143
Clp_N	Clp amino terminal domain	2.4E-12	38	20.70	179	227
AAA_16	AAA ATPase domain	2.9E-07	22	32.60	290	336
Sigma54_activat	Sigma-54 interaction domain	0.0011	10	20.20	291	392
ATPase_2	ATPase domain predominantly from Archaea	0.0078	7	33.20	293	326
NB-ARC	NB-ARC domain	0.0033	8	23.50	293	327
IstB_IS21	IstB-like ATP binding protein	0.00021	12	24.10	295	336
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.0038	8	26.60	295	344
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.0025	8	20.30	296	350
PhoH	PhoH-like protein	0.0025	8	20.10	298	337
TIP49	TIP49 C-terminus	0.01	6	23.80	299	344
AAA_7	P-loop containing dynein motor region	0.0073	7	25.80	305	331
ResIII	Type III restriction enzyme, res subunit	1	0	20.90	307	334
RsgA_GTPase	RsgA GTPase	0.035	5	30.00	307	330
AAA_22	AAA domain	0.0029	9	27.00	308	393
AAA_2	AAA domain (Cdc48 subfamily)	0.033	5	20.60	311	421
AAA	ATPase family associated with various cellular activities (AAA)	4.8E-12	38	20.80	313	422
AAA_5	AAA domain (dynein-related subfamily)	0.00028	12	20.80	313	391
AAA_18	AAA domain	0.058	5	29.40	313	332
Roc	Ras of Complex, Roc, domain of DAPkinase	0.031	6	27.00	313	328
NACHT	NACHT domain	0.00028	12	20.40	313	340
AAA_25	AAA domain	0.001	10	27.00	313	379
ABC_tran	ABC transporter	0.69	2	23.10	313	329
AAA_24	AAA domain	0.17	3	27.00	313	329
AAA_33	AAA domain	0.78	1	27.00	314	330
RNA_helicase	RNA helicase	0.027	6	21.50	314	337
AAA_14	AAA domain	0.012	7	27.00	319	393
ATPase_2	ATPase domain predominantly from Archaea	0.0039	8	33.20	362	394
AAA_16	AAA ATPase domain	0.97	1	32.60	364	390
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.038	5	20.00	367	392
ResIII	Type III restriction enzyme, res subunit	1	0	20.90	375	394
AAA_lid_9	AAA lid domain	8.7E-32	100	22.80	456	560
Torsin	Torsin	0.00021	13	20.90	618	683
TIP49	TIP49 C-terminus	0.15	2	23.80	628	680
AAA_16	AAA ATPase domain	0.00018	13	32.60	628	681
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.002	9	20.00	630	680
ResIII	Type III restriction enzyme, res subunit	0.0014	10	20.90	632	685
Zeta_toxin	Zeta toxin	0.00032	11	20.10	652	700
AAA_2	AAA domain (Cdc48 subfamily)	0	177	20.60	655	831
NB-ARC	NB-ARC domain	0.13	2	23.50	657	679
T2SSE	Type II/IV secretion system protein	0.00064	10	24.90	657	758
Sigma54_activat	Sigma-54 interaction domain	3.2E-06	18	20.20	658	776
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.0017	9	26.60	658	680
AAA_7	P-loop containing dynein motor region	6.8E-05	14	25.80	659	707
IstB_IS21	IstB-like ATP binding protein	0.00072	10	24.10	659	688
RsgA_GTPase	RsgA GTPase	0.0019	9	30.00	659	680
Roc	Ras of Complex, Roc, domain of DAPkinase	0.0024	9	27.00	660	692
AAA_25	AAA domain	0.027	5	27.00	660	682
NACHT	NACHT domain	0.27	2	20.40	660	679
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.023	5	20.30	660	679
AAA_24	AAA domain	0.0039	8	27.00	660	743
AAA_22	AAA domain	6.6E-05	14	27.00	660	772
AAA_5	AAA domain (dynein-related subfamily)	3.5E-14	44	20.80	660	780
AAA	ATPase family associated with various cellular activities (AAA)	3.7E-09	28	20.80	660	778
AAA_14	AAA domain	0.00017	13	27.00	661	756
RNA_helicase	RNA helicase	0.0011	11	21.50	661	681
AAA_18	AAA domain	0.00017	13	29.40	661	681
ABC_tran	ABC transporter	0.003	9	23.10	661	688
PhoH	PhoH-like protein	0.025	5	20.10	661	684
AAA_33	AAA domain	0.00094	10	27.00	661	701
ATPase_2	ATPase domain predominantly from Archaea	0.1	4	33.20	663	683
ClpB_D2-small	C-terminal, D2-small domain, of ClpB protein	2E-25	80	21.40	837	915