c2pfam

AT5G52820.1 :

Domain Description Evalue Bits GA Start End
NLE NLE (NUC135) domain 4.8E-10 30 21.10 16 71
Nbas_N Neuroblastoma-amplified sequence, N terminal 0.00061 9 27.00 74 138
eIF2A Eukaryotic translation initiation factor eIF2A 4.7E-06 16 20.50 76 181
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 8.6E-07 19 22.90 89 152
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 3.4E-06 16 29.50 97 142
WD40 WD domain, G-beta repeat 1E-12 38 21.00 100 137
Frtz WD repeat-containing and planar cell polarity effector protein Fritz 0.00015 10 26.20 107 178
nos_propeller Nitrous oxide reductase propeller repeat 0.25 1 30.00 107 126
WD40_like WD40-like domain 0.097 2 40.00 112 163
PD40 WD40-like Beta Propeller Repeat 0.0021 8 20.60 115 125
Proteasome_A_N Proteasome subunit A N-terminal signature 0.027 4 20.30 117 122
WD40 WD domain, G-beta repeat 5.6E-10 30 21.00 142 179
IKI3 IKI3 family 0.52 -2 19.30 146 178
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 8.9E-06 16 22.90 148 203
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.23 0 29.50 148 177
nos_propeller Nitrous oxide reductase propeller repeat 0.035 4 30.00 149 171
Nbas_N Neuroblastoma-amplified sequence, N terminal 0.16 1 27.00 150 179
PD40 WD40-like Beta Propeller Repeat 0.0034 7 20.60 158 167
Proteasome_A_N Proteasome subunit A N-terminal signature 0.14 2 20.30 159 164
WD40 WD domain, G-beta repeat 2.6E-07 21 21.00 189 227
eIF2A Eukaryotic translation initiation factor eIF2A 0.82 -1 20.50 221 254
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.00058 10 22.90 225 282
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.41 -1 29.50 229 268
WD40 WD domain, G-beta repeat 4.7E-08 24 21.00 234 267
WD40_like WD40-like domain 0.34 0 40.00 252 289
WD40 WD domain, G-beta repeat 5.5E-05 14 21.00 272 344
WD40 WD domain, G-beta repeat 1.6E-12 38 21.00 351 388
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.00065 8 29.50 355 388
Nbas_N Neuroblastoma-amplified sequence, N terminal 0.18 1 27.00 358 388
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.00013 12 22.90 358 398
eIF2A Eukaryotic translation initiation factor eIF2A 0.02 5 20.50 358 381
nos_propeller Nitrous oxide reductase propeller repeat 0.2 2 30.00 358 378
IKI3 IKI3 family 3.2E-06 15 19.30 362 456
Frtz WD repeat-containing and planar cell polarity effector protein Fritz 0.015 3 26.20 368 432
Proteasome_A_N Proteasome subunit A N-terminal signature 0.077 3 20.30 368 373
PD40 WD40-like Beta Propeller Repeat 0.00051 10 20.60 368 376
TRAP-delta Translocon-associated protein, delta subunit precursor (TRAP-delta) 0.00015 11 25.00 381 420
WD40 WD domain, G-beta repeat 1.1E-11 35 21.00 392 429
eIF2A Eukaryotic translation initiation factor eIF2A 0.00093 9 20.50 402 463
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 7.3E-06 16 22.90 403 453
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.44 -1 29.50 404 436
WD40_like WD40-like domain 0.0037 6 40.00 404 436
Nbas_N Neuroblastoma-amplified sequence, N terminal 0.11 1 27.00 406 456
WD40 WD domain, G-beta repeat 5.4E-10 30 21.00 438 472
WD40_like WD40-like domain 0.028 4 40.00 446 470
PD40 WD40-like Beta Propeller Repeat 0.1 3 20.60 452 458
Proteasome_A_N Proteasome subunit A N-terminal signature 0.8 -1 20.30 452 456

473

NLE
Nbas_N
eIF2A
ANAPC4_WD40
Ge1_WD40
WD40
Frtz
nos_propeller
WD40_like
PD40
Proteasome_A_N
WD40
IKI3
ANAPC4_WD40
Ge1_WD40
nos_propeller
Nbas_N
PD40
Proteasome_A_N
WD40
eIF2A
ANAPC4_WD40
Ge1_WD40
WD40
WD40_like
WD40
WD40
Ge1_WD40
Nbas_N
ANAPC4_WD40
eIF2A
nos_propeller
IKI3
Frtz
Proteasome_A_N
PD40
TRAP-delta
WD40
eIF2A
ANAPC4_WD40
Ge1_WD40
WD40_like
Nbas_N
WD40
WD40_like
PD40
Proteasome_A_N

References:

eIF2A
12133843 Characterization of mammalian eIF2A and identification of the yeast homolog. J Biol Chem. 2002;277:37079-37087.

Frtz

IKI3
10024884 Elongator, a multisubunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation. Mol Cell 1999;3:109-118.

ANAPC4_WD40

PD40
8090199 The ancient regulatory-protein family of WD-repeat proteins. Nature 1994;371:297-300.

Nbas_N

nos_propeller

Proteasome_A_N

NLE
15112237 Insights into the evolution of the nucleolus by an analysis of its protein domain repertoire. Bioessays 2004;26:567-581.

TRAP-delta
7492314 Translocon-associated protein TRAP delta and a novel TRAP-like protein are coordinately expressed with pro-opiomelanocortin in Xenopus intermediate pituitary. Biochem J 1995;312:205-213.
9286695 Genomic organization of two novel genes on human Xq28: compact head to head arrangement of IDH gamma and TRAP delta is conserved in rat and mouse. Genomics 1997;44:8-14.

WD40
8090199 The ancient regulatory-protein family of WD-repeat proteins. Nature 1994;371:297-300.

WD40_like

Ge1_WD40

Domain	Description	Evalue	Bits	GA	Start	End
NLE	NLE (NUC135) domain	4.8E-10	30	21.10	16	71
Nbas_N	Neuroblastoma-amplified sequence, N terminal	0.00061	9	27.00	74	138
eIF2A	Eukaryotic translation initiation factor eIF2A	4.7E-06	16	20.50	76	181
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	8.6E-07	19	22.90	89	152
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	3.4E-06	16	29.50	97	142
WD40	WD domain, G-beta repeat	1E-12	38	21.00	100	137
Frtz	WD repeat-containing and planar cell polarity effector protein Fritz	0.00015	10	26.20	107	178
nos_propeller	Nitrous oxide reductase propeller repeat	0.25	1	30.00	107	126
WD40_like	WD40-like domain	0.097	2	40.00	112	163
PD40	WD40-like Beta Propeller Repeat	0.0021	8	20.60	115	125
Proteasome_A_N	Proteasome subunit A N-terminal signature	0.027	4	20.30	117	122
WD40	WD domain, G-beta repeat	5.6E-10	30	21.00	142	179
IKI3	IKI3 family	0.52	-2	19.30	146	178
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	8.9E-06	16	22.90	148	203
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.23	0	29.50	148	177
nos_propeller	Nitrous oxide reductase propeller repeat	0.035	4	30.00	149	171
Nbas_N	Neuroblastoma-amplified sequence, N terminal	0.16	1	27.00	150	179
PD40	WD40-like Beta Propeller Repeat	0.0034	7	20.60	158	167
Proteasome_A_N	Proteasome subunit A N-terminal signature	0.14	2	20.30	159	164
WD40	WD domain, G-beta repeat	2.6E-07	21	21.00	189	227
eIF2A	Eukaryotic translation initiation factor eIF2A	0.82	-1	20.50	221	254
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.00058	10	22.90	225	282
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.41	-1	29.50	229	268
WD40	WD domain, G-beta repeat	4.7E-08	24	21.00	234	267
WD40_like	WD40-like domain	0.34	0	40.00	252	289
WD40	WD domain, G-beta repeat	5.5E-05	14	21.00	272	344
WD40	WD domain, G-beta repeat	1.6E-12	38	21.00	351	388
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.00065	8	29.50	355	388
Nbas_N	Neuroblastoma-amplified sequence, N terminal	0.18	1	27.00	358	388
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.00013	12	22.90	358	398
eIF2A	Eukaryotic translation initiation factor eIF2A	0.02	5	20.50	358	381
nos_propeller	Nitrous oxide reductase propeller repeat	0.2	2	30.00	358	378
IKI3	IKI3 family	3.2E-06	15	19.30	362	456
Frtz	WD repeat-containing and planar cell polarity effector protein Fritz	0.015	3	26.20	368	432
Proteasome_A_N	Proteasome subunit A N-terminal signature	0.077	3	20.30	368	373
PD40	WD40-like Beta Propeller Repeat	0.00051	10	20.60	368	376
TRAP-delta	Translocon-associated protein, delta subunit precursor (TRAP-delta)	0.00015	11	25.00	381	420
WD40	WD domain, G-beta repeat	1.1E-11	35	21.00	392	429
eIF2A	Eukaryotic translation initiation factor eIF2A	0.00093	9	20.50	402	463
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	7.3E-06	16	22.90	403	453
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.44	-1	29.50	404	436
WD40_like	WD40-like domain	0.0037	6	40.00	404	436
Nbas_N	Neuroblastoma-amplified sequence, N terminal	0.11	1	27.00	406	456
WD40	WD domain, G-beta repeat	5.4E-10	30	21.00	438	472
WD40_like	WD40-like domain	0.028	4	40.00	446	470
PD40	WD40-like Beta Propeller Repeat	0.1	3	20.60	452	458
Proteasome_A_N	Proteasome subunit A N-terminal signature	0.8	-1	20.30	452	456