c2pfam

AT5G52850.1 :

Domain Description Evalue Bits GA Start End
PPR_2 PPR repeat family 0.00041 11 30.00 61 87
PPR PPR repeat 0.0018 9 25.00 61 85
PPR_1 PPR repeat 0.11 2 23.80 76 85
PPR_1 PPR repeat 0.0011 9 23.80 88 115
PPR_2 PPR repeat family 1E-13 41 30.00 88 135
PPR_3 Pentatricopeptide repeat domain 0.00089 9 25.00 89 134
TPR_14 Tetratricopeptide repeat 0.79 1 23.50 91 115
PPR PPR repeat 1.1E-07 22 25.00 91 119
TPR_7 Tetratricopeptide repeat 0.087 3 27.90 98 117
PPR_long Pentacotripeptide-repeat region of PRORP 4E-06 16 27.00 101 141
TPR_19 Tetratricopeptide repeat 0.45 1 25.00 102 117
PPR_1 PPR repeat 0.097 3 23.80 119 132
PPR PPR repeat 0.00013 12 25.00 164 186
TPR_19 Tetratricopeptide repeat 0.078 4 25.00 165 189
TPR_7 Tetratricopeptide repeat 0.0073 7 27.90 165 182
TPR_8 Tetratricopeptide repeat 0.03 5 25.70 165 182
TPR_2 Tetratricopeptide repeat 0.045 4 22.40 165 182
TPR_12 Tetratricopeptide repeat 0.84 0 30.10 165 183
TPR_14 Tetratricopeptide repeat 0.61 1 23.50 166 183
PPR_1 PPR repeat 0.048 4 23.80 167 183
PPR_2 PPR repeat family 0.0099 6 30.00 168 186
PPR_2 PPR repeat family 2.2E-13 40 30.00 189 232
PPR_1 PPR repeat 0.004 7 23.80 189 217
PPR_3 Pentatricopeptide repeat domain 0.00044 10 25.00 189 234
PPR PPR repeat 3.4E-08 24 25.00 191 221
PPR_long Pentacotripeptide-repeat region of PRORP 0.064 2 27.00 206 229
PPR_3 Pentatricopeptide repeat domain 0.098 3 25.00 250 283
PPR_1 PPR repeat 0.23 1 23.80 254 283
PPR_2 PPR repeat family 0.15 2 30.00 258 283
PPR PPR repeat 0.033 5 25.00 263 283
TPR_19 Tetratricopeptide repeat 0.46 1 25.00 264 289
PPR_3 Pentatricopeptide repeat domain 4.9E-07 20 25.00 289 335
PPR_2 PPR repeat family 3.4E-12 36 30.00 289 335
PPR_1 PPR repeat 0.038 4 23.80 289 317
PPR PPR repeat 5.4E-07 20 25.00 292 321
PPR_long Pentacotripeptide-repeat region of PRORP 0.00013 11 27.00 302 347
PPR_1 PPR repeat 0.0059 6 23.80 320 333
PPR_2 PPR repeat family 0.85 0 30.00 364 388
PPR_long Pentacotripeptide-repeat region of PRORP 4.8E-05 13 27.00 386 458
PPR_3 Pentatricopeptide repeat domain 1.5E-06 18 25.00 388 438
PPR_1 PPR repeat 4.1E-05 13 23.80 388 419
PPR_2 PPR repeat family 9.6E-15 45 30.00 390 438
PPR PPR repeat 4E-07 20 25.00 393 422
PPR_1 PPR repeat 0.31 1 23.80 422 431
PPR PPR repeat 0.16 3 25.00 428 453
PPR_2 PPR repeat family 8.6E-06 16 30.00 464 501
PPR PPR repeat 2.9E-05 14 25.00 466 491
PPR_1 PPR repeat 0.014 5 23.80 466 489
PPR_3 Pentatricopeptide repeat domain 0.12 3 25.00 466 490
PPR_long Pentacotripeptide-repeat region of PRORP 0.0061 6 27.00 468 543
PPR_3 Pentatricopeptide repeat domain 0.00066 10 25.00 492 525
PPR_1 PPR repeat 0.13 2 23.80 492 503
PPR_2 PPR repeat family 7.2E-05 13 30.00 492 528
PPR PPR repeat 0.00011 12 25.00 494 524
TPR_12 Tetratricopeptide repeat 0.5 1 30.10 563 588
TPR_8 Tetratricopeptide repeat 0.0055 7 25.70 564 588
TPR_7 Tetratricopeptide repeat 0.21 2 27.90 566 588
PPR PPR repeat 1.5E-06 18 25.00 566 589
PPR_2 PPR repeat family 0.0014 9 30.00 566 588
PPR_1 PPR repeat 4.1E-05 13 23.80 567 588
TPR_19 Tetratricopeptide repeat 0.21 2 25.00 567 590
PPR_3 Pentatricopeptide repeat domain 0.65 0 25.00 567 589
TPR_14 Tetratricopeptide repeat 0.76 1 23.50 569 589
TPR_2 Tetratricopeptide repeat 0.92 0 22.40 573 588
PPR_1 PPR repeat 7.3E-08 22 23.80 591 621
PPR_2 PPR repeat family 1.9E-13 41 30.00 592 640
PPR_3 Pentatricopeptide repeat domain 7.4E-06 16 25.00 592 640
PPR PPR repeat 7.5E-08 22 25.00 595 623
PPR_long Pentacotripeptide-repeat region of PRORP 0.00014 11 27.00 610 708
PPR_1 PPR repeat 0.032 4 23.80 626 644
PPR PPR repeat 0.0012 9 25.00 630 657
PPR_3 Pentatricopeptide repeat domain 4.6E-05 14 25.00 658 707
PPR_1 PPR repeat 0.00065 9 23.80 661 691
PPR_2 PPR repeat family 0.079 3 30.00 666 707
PPR PPR repeat 0.0034 8 25.00 668 692
PPR_1 PPR repeat 0.66 0 23.80 692 705
TPR_14 Tetratricopeptide repeat 1.6E-05 16 23.50 701 740
PPR_3 Pentatricopeptide repeat domain 0.47 1 25.00 717 762
TPR_17 Tetratricopeptide repeat 0.00014 12 24.40 721 752
TPR_19 Tetratricopeptide repeat 0.00057 10 25.00 724 753
TPR_12 Tetratricopeptide repeat 0.026 5 30.10 732 751
TPR_2 Tetratricopeptide repeat 0.23 2 22.40 732 752
TPR_8 Tetratricopeptide repeat 0.0082 7 25.70 733 752
TPR_7 Tetratricopeptide repeat 0.73 0 27.90 734 750
PSII_Pbs27 Photosystem II Pbs27 1.4E-05 15 25.00 752 819
DYW_deaminase DYW family of nucleic acid deaminases 7.2E-17 51 31.60 767 879

893

PPR_2
PPR
PPR_1
PPR_1
PPR_2
PPR_3
TPR_14
PPR
TPR_7
PPR_long
TPR_19
PPR_1
PPR
TPR_19
TPR_7
TPR_8
TPR_2
TPR_12
TPR_14
PPR_1
PPR_2
PPR_2
PPR_1
PPR_3
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
TPR_19
PPR_3
PPR_2
PPR_1
PPR
PPR_long
PPR_1
PPR_2
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR
PPR_2
PPR
PPR_1
PPR_3
PPR_long
PPR_3
PPR_1
PPR_2
PPR
TPR_12
TPR_8
TPR_7
PPR
PPR_2
PPR_1
TPR_19
PPR_3
TPR_14
TPR_2
PPR_1
PPR_2
PPR_3
PPR
PPR_long
PPR_1
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_1
TPR_14
PPR_3
TPR_17
TPR_19
TPR_12
TPR_2
TPR_8
TPR_7
PSII_Pbs27
DYW_deaminase

References:

TPR_7

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_14

TPR_19

TPR_17

PPR_long

PPR_3

PPR_2

PPR_1

DYW_deaminase

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

PSII_Pbs27

TPR_12

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
PPR_2	PPR repeat family	0.00041	11	30.00	61	87
PPR	PPR repeat	0.0018	9	25.00	61	85
PPR_1	PPR repeat	0.11	2	23.80	76	85
PPR_1	PPR repeat	0.0011	9	23.80	88	115
PPR_2	PPR repeat family	1E-13	41	30.00	88	135
PPR_3	Pentatricopeptide repeat domain	0.00089	9	25.00	89	134
TPR_14	Tetratricopeptide repeat	0.79	1	23.50	91	115
PPR	PPR repeat	1.1E-07	22	25.00	91	119
TPR_7	Tetratricopeptide repeat	0.087	3	27.90	98	117
PPR_long	Pentacotripeptide-repeat region of PRORP	4E-06	16	27.00	101	141
TPR_19	Tetratricopeptide repeat	0.45	1	25.00	102	117
PPR_1	PPR repeat	0.097	3	23.80	119	132
PPR	PPR repeat	0.00013	12	25.00	164	186
TPR_19	Tetratricopeptide repeat	0.078	4	25.00	165	189
TPR_7	Tetratricopeptide repeat	0.0073	7	27.90	165	182
TPR_8	Tetratricopeptide repeat	0.03	5	25.70	165	182
TPR_2	Tetratricopeptide repeat	0.045	4	22.40	165	182
TPR_12	Tetratricopeptide repeat	0.84	0	30.10	165	183
TPR_14	Tetratricopeptide repeat	0.61	1	23.50	166	183
PPR_1	PPR repeat	0.048	4	23.80	167	183
PPR_2	PPR repeat family	0.0099	6	30.00	168	186
PPR_2	PPR repeat family	2.2E-13	40	30.00	189	232
PPR_1	PPR repeat	0.004	7	23.80	189	217
PPR_3	Pentatricopeptide repeat domain	0.00044	10	25.00	189	234
PPR	PPR repeat	3.4E-08	24	25.00	191	221
PPR_long	Pentacotripeptide-repeat region of PRORP	0.064	2	27.00	206	229
PPR_3	Pentatricopeptide repeat domain	0.098	3	25.00	250	283
PPR_1	PPR repeat	0.23	1	23.80	254	283
PPR_2	PPR repeat family	0.15	2	30.00	258	283
PPR	PPR repeat	0.033	5	25.00	263	283
TPR_19	Tetratricopeptide repeat	0.46	1	25.00	264	289
PPR_3	Pentatricopeptide repeat domain	4.9E-07	20	25.00	289	335
PPR_2	PPR repeat family	3.4E-12	36	30.00	289	335
PPR_1	PPR repeat	0.038	4	23.80	289	317
PPR	PPR repeat	5.4E-07	20	25.00	292	321
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00013	11	27.00	302	347
PPR_1	PPR repeat	0.0059	6	23.80	320	333
PPR_2	PPR repeat family	0.85	0	30.00	364	388
PPR_long	Pentacotripeptide-repeat region of PRORP	4.8E-05	13	27.00	386	458
PPR_3	Pentatricopeptide repeat domain	1.5E-06	18	25.00	388	438
PPR_1	PPR repeat	4.1E-05	13	23.80	388	419
PPR_2	PPR repeat family	9.6E-15	45	30.00	390	438
PPR	PPR repeat	4E-07	20	25.00	393	422
PPR_1	PPR repeat	0.31	1	23.80	422	431
PPR	PPR repeat	0.16	3	25.00	428	453
PPR_2	PPR repeat family	8.6E-06	16	30.00	464	501
PPR	PPR repeat	2.9E-05	14	25.00	466	491
PPR_1	PPR repeat	0.014	5	23.80	466	489
PPR_3	Pentatricopeptide repeat domain	0.12	3	25.00	466	490
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0061	6	27.00	468	543
PPR_3	Pentatricopeptide repeat domain	0.00066	10	25.00	492	525
PPR_1	PPR repeat	0.13	2	23.80	492	503
PPR_2	PPR repeat family	7.2E-05	13	30.00	492	528
PPR	PPR repeat	0.00011	12	25.00	494	524
TPR_12	Tetratricopeptide repeat	0.5	1	30.10	563	588
TPR_8	Tetratricopeptide repeat	0.0055	7	25.70	564	588
TPR_7	Tetratricopeptide repeat	0.21	2	27.90	566	588
PPR	PPR repeat	1.5E-06	18	25.00	566	589
PPR_2	PPR repeat family	0.0014	9	30.00	566	588
PPR_1	PPR repeat	4.1E-05	13	23.80	567	588
TPR_19	Tetratricopeptide repeat	0.21	2	25.00	567	590
PPR_3	Pentatricopeptide repeat domain	0.65	0	25.00	567	589
TPR_14	Tetratricopeptide repeat	0.76	1	23.50	569	589
TPR_2	Tetratricopeptide repeat	0.92	0	22.40	573	588
PPR_1	PPR repeat	7.3E-08	22	23.80	591	621
PPR_2	PPR repeat family	1.9E-13	41	30.00	592	640
PPR_3	Pentatricopeptide repeat domain	7.4E-06	16	25.00	592	640
PPR	PPR repeat	7.5E-08	22	25.00	595	623
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00014	11	27.00	610	708
PPR_1	PPR repeat	0.032	4	23.80	626	644
PPR	PPR repeat	0.0012	9	25.00	630	657
PPR_3	Pentatricopeptide repeat domain	4.6E-05	14	25.00	658	707
PPR_1	PPR repeat	0.00065	9	23.80	661	691
PPR_2	PPR repeat family	0.079	3	30.00	666	707
PPR	PPR repeat	0.0034	8	25.00	668	692
PPR_1	PPR repeat	0.66	0	23.80	692	705
TPR_14	Tetratricopeptide repeat	1.6E-05	16	23.50	701	740
PPR_3	Pentatricopeptide repeat domain	0.47	1	25.00	717	762
TPR_17	Tetratricopeptide repeat	0.00014	12	24.40	721	752
TPR_19	Tetratricopeptide repeat	0.00057	10	25.00	724	753
TPR_12	Tetratricopeptide repeat	0.026	5	30.10	732	751
TPR_2	Tetratricopeptide repeat	0.23	2	22.40	732	752
TPR_8	Tetratricopeptide repeat	0.0082	7	25.70	733	752
TPR_7	Tetratricopeptide repeat	0.73	0	27.90	734	750
PSII_Pbs27	Photosystem II Pbs27	1.4E-05	15	25.00	752	819
DYW_deaminase	DYW family of nucleic acid deaminases	7.2E-17	51	31.60	767	879