c2pfam

AT5G53350.1 :

Domain Description Evalue Bits GA Start End
Mg_chelatase Magnesium chelatase, subunit ChlI 0.4 1 20.30 171 186
MCM MCM2/3/5 family 2.2E-08 24 25.20 211 305
T2SSE Type II/IV secretion system protein 5.2E-06 16 24.90 216 249
Sigma54_activat Sigma-54 interaction domain 6.8E-05 13 20.20 218 246
AAA_29 P-loop containing region of AAA domain 0.00046 11 27.00 218 237
AAA_19 AAA domain 0.0048 8 25.10 219 244
DEAD DEAD/DEAH box helicase 0.0013 9 20.60 221 240
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 6.3E-05 14 26.60 222 249
IstB_IS21 IstB-like ATP binding protein 1.7E-05 15 24.10 222 244
Sigma54_activ_2 Sigma-54 interaction domain 2.5E-05 15 25.00 222 303
AAA_7 P-loop containing dynein motor region 1.8E-05 15 25.80 222 298
AAA_2 AAA domain (Cdc48 subfamily) 0 150 20.60 222 426
AAA_22 AAA domain 2E-07 22 27.00 223 311
AAA_24 AAA domain 7.4E-05 13 27.00 223 249
ABC_tran ABC transporter 4E-05 15 23.10 224 249
RuvB_N Holliday junction DNA helicase ruvB N-terminus 3.1E-06 18 20.00 224 306
Mg_chelatase Magnesium chelatase, subunit ChlI 1.2E-05 15 20.30 224 246
AAA_16 AAA ATPase domain 4.4E-05 15 32.60 224 248
AAA_5 AAA domain (dynein-related subfamily) 6.5E-08 23 20.80 225 303
AAA_14 AAA domain 8E-05 13 27.00 225 311
RNA_helicase RNA helicase 0.00015 13 21.50 226 303
AAA ATPase family associated with various cellular activities (AAA) 5.8E-17 53 20.80 226 332
AAA_18 AAA domain 3.9E-05 15 29.40 226 282
Terminase_6 Terminase-like family 0.87 0 20.30 227 239
AAA_19 AAA domain 0.32 2 25.10 255 307
Mg_chelatase Magnesium chelatase, subunit ChlI 0.087 3 20.30 283 304
Sigma54_activat Sigma-54 interaction domain 0.11 3 20.20 284 303
Terminase_6 Terminase-like family 0.0011 9 20.30 285 319
ClpB_D2-small C-terminal, D2-small domain, of ClpB protein 4.7E-16 49 21.40 433 507

579

Mg_chelatase
MCM
T2SSE
Sigma54_activat
AAA_29
AAA_19
DEAD
TsaE
IstB_IS21
Sigma54_activ_2
AAA_7
AAA_2
AAA_22
AAA_24
ABC_tran
RuvB_N
Mg_chelatase
AAA_16
AAA_5
AAA_14
RNA_helicase
AAA
AAA_18
Terminase_6
AAA_19
Mg_chelatase
Sigma54_activat
Terminase_6
ClpB_D2-small

References:

IstB_IS21

AAA_16

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

TsaE

T2SSE

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

Sigma54_activat
11544185 Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev 2001;15:2282-2294.
12618438 Domain Architectures of sigma(54)-Dependent Transcriptional Activators. J Bacteriol 2003;185:1757-1767.

AAA_7

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

ClpB_D2-small
14567920 The structure of ClpB: a molecular chaperone that rescues proteins from an aggregated state. Cell. 2003;115:229-240.

AAA_29

Sigma54_activ_2

AAA_18

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA_24

Terminase_6

AAA_22

AAA_19

MCM
8332451 A common set of conserved motifs in a vast variety of putative nucleic acid-dependent ATPases including MCM proteins involved in the initiation of eukaryotic DNA replication. Nucleic Acids Res 1993;21:2541-2547.

Domain	Description	Evalue	Bits	GA	Start	End
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.4	1	20.30	171	186
MCM	MCM2/3/5 family	2.2E-08	24	25.20	211	305
T2SSE	Type II/IV secretion system protein	5.2E-06	16	24.90	216	249
Sigma54_activat	Sigma-54 interaction domain	6.8E-05	13	20.20	218	246
AAA_29	P-loop containing region of AAA domain	0.00046	11	27.00	218	237
AAA_19	AAA domain	0.0048	8	25.10	219	244
DEAD	DEAD/DEAH box helicase	0.0013	9	20.60	221	240
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	6.3E-05	14	26.60	222	249
IstB_IS21	IstB-like ATP binding protein	1.7E-05	15	24.10	222	244
Sigma54_activ_2	Sigma-54 interaction domain	2.5E-05	15	25.00	222	303
AAA_7	P-loop containing dynein motor region	1.8E-05	15	25.80	222	298
AAA_2	AAA domain (Cdc48 subfamily)	0	150	20.60	222	426
AAA_22	AAA domain	2E-07	22	27.00	223	311
AAA_24	AAA domain	7.4E-05	13	27.00	223	249
ABC_tran	ABC transporter	4E-05	15	23.10	224	249
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	3.1E-06	18	20.00	224	306
Mg_chelatase	Magnesium chelatase, subunit ChlI	1.2E-05	15	20.30	224	246
AAA_16	AAA ATPase domain	4.4E-05	15	32.60	224	248
AAA_5	AAA domain (dynein-related subfamily)	6.5E-08	23	20.80	225	303
AAA_14	AAA domain	8E-05	13	27.00	225	311
RNA_helicase	RNA helicase	0.00015	13	21.50	226	303
AAA	ATPase family associated with various cellular activities (AAA)	5.8E-17	53	20.80	226	332
AAA_18	AAA domain	3.9E-05	15	29.40	226	282
Terminase_6	Terminase-like family	0.87	0	20.30	227	239
AAA_19	AAA domain	0.32	2	25.10	255	307
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.087	3	20.30	283	304
Sigma54_activat	Sigma-54 interaction domain	0.11	3	20.20	284	303
Terminase_6	Terminase-like family	0.0011	9	20.30	285	319
ClpB_D2-small	C-terminal, D2-small domain, of ClpB protein	4.7E-16	49	21.40	433	507