AT1G03540.1 :

DomainDescriptionEvalueBitsGAStartEnd
PPRPPR repeat0.051425.003650
PPR_2PPR repeat family 0.13330.003670
PPR_1PPR repeat0.016523.803650
TPR_19Tetratricopeptide repeat0.043425.003652
TPR_12Tetratricopeptide repeat0.5130.103650
ANAPC3Anaphase-promoting complex, cyclosome, subunit 30.067427.203665
TPR_14Tetratricopeptide repeat0.68123.503850
PPR_longPentacotripeptide-repeat region of PRORP0.034327.0041105
PPR_2PPR repeat family 3.2E-103030.00126173
PPR_3Pentatricopeptide repeat domain0.041425.00127160
PPR_1PPR repeat0.11223.80127155
PPRPPR repeat1.7E-082525.00129159
Vps39_1Vacuolar sorting protein 39 domain 10.16221.40130156
PPR_longPentacotripeptide-repeat region of PRORP0.0025727.00145178
PPRPPR repeat0.0024825.00202226
PPR_2PPR repeat family 0.24230.00210225
PPR_3Pentatricopeptide repeat domain0.4125.00210239
PPR_1PPR repeat0.16223.80216224
PPR_1PPR repeat0.000561023.80226252
PPR_3Pentatricopeptide repeat domain0.000771025.00226277
PPR_2PPR repeat family 5.7E-123630.00227275
PPRPPR repeat8.5E-082225.00231257
PPR_3Pentatricopeptide repeat domain0.000281125.00259312
PPR_1PPR repeat0.21223.80259272
PPR_longPentacotripeptide-repeat region of PRORP0.000111227.00266362
PPRPPR repeat0.0088725.00266296
PPR_3Pentatricopeptide repeat domain0.029525.00293329
PPR_2PPR repeat family 2.5E-051530.00299330
PPRPPR repeat2.5E-061825.00304330
PPR_1PPR repeat0.00011223.80304326
TPR_19Tetratricopeptide repeat0.11325.00318357
Vps39_1Vacuolar sorting protein 39 domain 10.0029821.40329359
PPR_2PPR repeat family 2.6E-113430.00329373
PPR_1PPR repeat1.5E-092823.80330358
PPR_3Pentatricopeptide repeat domain3.1E-051425.00330361
PPRPPR repeat1.5E-123725.00332361
TPR_14Tetratricopeptide repeat0.0022923.50334361
TPR_12Tetratricopeptide repeat0.037430.10341355
TPR_10Tetratricopeptide repeat0.12327.50341356
ANAPC3Anaphase-promoting complex, cyclosome, subunit 30.0054727.20341362
TPR_7Tetratricopeptide repeat0.0042727.90341356
TPR_2Tetratricopeptide repeat0.034522.40341356
TPR_8Tetratricopeptide repeat0.11325.70343356
PPR_1PPR repeat0.0015823.80391424
PPR_2PPR repeat family 0.000741030.00396427
PPRPPR repeat2.1E-051525.00401424
PPR_longPentacotripeptide-repeat region of PRORP0.000181127.00408509
PPR_3Pentatricopeptide repeat domain6.8E-102925.00427475
PPR_1PPR repeat2.8E-072023.80427455
PPR_2PPR repeat family 6.1E-164930.00427473
PPRPPR repeat1.3E-123725.00429459
TPR_12Tetratricopeptide repeat0.43130.10430452
TPR_14Tetratricopeptide repeat0.013723.50431458
TPR_8Tetratricopeptide repeat0.15325.70431452
TPR_19Tetratricopeptide repeat0.85025.00437468
TPR_10Tetratricopeptide repeat0.24227.50437451
PPR_2PPR repeat family 0.000671030.00461509
PPRPPR repeat0.0023825.00465491
PPR_1PPR repeat6.4E-071923.80494524
PPR_2PPR repeat family 0.0031830.00498523
PPRPPR repeat6.7E-072025.00501525
TPR_14Tetratricopeptide repeat0.0025923.50504534
TPR_19Tetratricopeptide repeat0.33225.00509525
TPR_12Tetratricopeptide repeat0.083330.10509525
TPR_10Tetratricopeptide repeat0.038427.50511525
TPR_7Tetratricopeptide repeat0.17227.90511525
TPR_2Tetratricopeptide repeat0.41122.40511525
PPR_longPentacotripeptide-repeat region of PRORP0.39027.00541598
TPR_19Tetratricopeptide repeat0.052425.00551587
TPR_17Tetratricopeptide repeat0.0013924.40556586
Vps39_1Vacuolar sorting protein 39 domain 10.57121.40565590
TPR_10Tetratricopeptide repeat0.0095627.50567588
TPR_12Tetratricopeptide repeat0.12330.10568587
TPR_8Tetratricopeptide repeat0.67125.70568585
PPRPPR repeat0.013625.00568597
PPR_2PPR repeat family 0.5130.00574597

 609

PPR
PPR_2
PPR_1
TPR_19
TPR_12
ANAPC3
TPR_14
PPR_long
PPR_2
PPR_3
PPR_1
PPR
Vps39_1
PPR_long
PPR
PPR_2
PPR_3
PPR_1
PPR_1
PPR_3
PPR_2
PPR
PPR_3
PPR_1
PPR_long
PPR
PPR_3
PPR_2
PPR
PPR_1
TPR_19
Vps39_1
PPR_2
PPR_1
PPR_3
PPR
TPR_14
TPR_12
TPR_10
ANAPC3
TPR_7
TPR_2
TPR_8
PPR_1
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR_2
PPR
TPR_12
TPR_14
TPR_8
TPR_19
TPR_10
PPR_2
PPR
PPR_1
PPR_2
PPR
TPR_14
TPR_19
TPR_12
TPR_10
TPR_7
TPR_2
PPR_long
TPR_19
TPR_17
Vps39_1
TPR_10
TPR_12
TPR_8
PPR
PPR_2


References:

TPR_7

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_14

Vps39_1
11062257 New component of the vacuolar class C-Vps complex couples nucleotide exchange on the Ypt7 GTPase to SNARE-dependent docking and fusion. J Cell Biol. 2000;151:551-562.
9111041 Vam2/Vps41p and Vam6/Vps39p are components of a protein complex on the vacuolar membranes and involved in the vacuolar assembly in the yeast Saccharomyces cerevisiae. J Biol Chem. 1997;272:11344-11349.
1493335 Morphological classification of the yeast vacuolar protein sorting mutants: evidence for a prevacuolar compartment in class E vps mutants. Mol Biol Cell. 1992;3:1389-1402.

TPR_19

TPR_17

PPR_long

PPR_3

PPR_2

PPR_1

TPR_10

ANAPC3

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_12

TPR_8