c2pfam

AT5G54900.1 :

Domain Description Evalue Bits GA Start End
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.2E-14 41 20.70 62 129
PhageP22-tail Salmonella phage P22 tailspike 6.1E-05 10 25.00 69 137
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.21 0 27.00 78 126
RRM_7 RNA recognition motif 0.94 -1 27.00 98 119
RRM_7 RNA recognition motif 0.0022 7 27.00 155 206
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.5E-20 62 20.70 156 224
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.0015 7 27.00 177 248
RRM_3 RNA binding motif 0.94 -1 21.30 199 214
RRM_occluded Occluded RNA-recognition motif 0.064 2 30.00 200 230
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3.5E-08 22 27.00 248 330
Nup35_RRM_2 Nup53/35/40-type RNA recognition motif 4.7E-06 16 27.00 260 312
RRM_occluded Occluded RNA-recognition motif 3.8E-07 19 30.00 261 327
RRM_7 RNA recognition motif 2E-06 17 27.00 261 293
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9.2E-21 63 20.70 262 326
RRM_3 RNA binding motif 4.2E-06 16 21.30 262 316

387

RRM_1
PhageP22-tail
RRM_5
RRM_7
RRM_7
RRM_1
RRM_5
RRM_3
RRM_occluded
RRM_5
Nup35_RRM_2
RRM_occluded
RRM_7
RRM_1
RRM_3

References:

RRM_7

RRM_5

Nup35_RRM_2

PhageP22-tail
8855221 Crystal structure of phage P22 tailspike protein complexed with Salmonella sp. O-antigen receptors. Proc Natl Acad Sci U S A. 1996;93:10584-10588.

RRM_3
12842046 Structure of the C-terminal domain of human La protein reveals a novel RNA recognition motif coupled to a helical nuclear retention element. Structure. 2003;11:833-843.

RRM_1
8290338 Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors. Nucleic Acid Res 1993;21:5803-5816.

RRM_occluded

Domain	Description	Evalue	Bits	GA	Start	End
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	5.2E-14	41	20.70	62	129
PhageP22-tail	Salmonella phage P22 tailspike	6.1E-05	10	25.00	69	137
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	0.21	0	27.00	78	126
RRM_7	RNA recognition motif	0.94	-1	27.00	98	119
RRM_7	RNA recognition motif	0.0022	7	27.00	155	206
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	1.5E-20	62	20.70	156	224
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	0.0015	7	27.00	177	248
RRM_3	RNA binding motif	0.94	-1	21.30	199	214
RRM_occluded	Occluded RNA-recognition motif	0.064	2	30.00	200	230
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	3.5E-08	22	27.00	248	330
Nup35_RRM_2	Nup53/35/40-type RNA recognition motif	4.7E-06	16	27.00	260	312
RRM_occluded	Occluded RNA-recognition motif	3.8E-07	19	30.00	261	327
RRM_7	RNA recognition motif	2E-06	17	27.00	261	293
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	9.2E-21	63	20.70	262	326
RRM_3	RNA binding motif	4.2E-06	16	21.30	262	316