c2pfam

AT5G55190.1 :

Domain Description Evalue Bits GA Start End
Arf ADP-ribosylation factor family 3.1E-14 43 20.30 13 139
Pox_A32 Poxvirus A32 protein 2.5E-05 14 20.50 13 41
Septin Septin 0.0002 11 20.00 13 33
G-alpha G-protein alpha subunit 0.0039 6 20.10 13 32
NB-ARC NB-ARC domain 0.00018 11 23.50 13 48
ABC_tran ABC transporter 0.0006 11 23.10 15 39
AAA_24 AAA domain 7.8E-05 13 27.00 15 32
AAA_7 P-loop containing dynein motor region 0.00019 11 25.80 15 44
Ras Ras family 0 169 20.80 15 171
Roc Ras of Complex, Roc, domain of DAPkinase 2E-32 102 27.00 15 128
RsgA_GTPase RsgA GTPase 0.015 5 30.00 16 32
MMR_HSR1 GTPase of unknown function 7.9E-07 19 24.50 16 126
ATPase KaiC 5.5E-05 13 26.60 17 58
RNA_helicase RNA helicase 3.6E-08 24 21.50 17 139
AAA_33 AAA domain 0.00032 11 27.00 17 34
ATP_bind_1 Conserved hypothetical ATP binding protein 0.015 5 20.20 18 33
ArgoMid Mid domain of argonaute 0.00028 11 27.50 87 135
G-alpha G-protein alpha subunit 0.072 2 20.10 114 142
RsgA_GTPase RsgA GTPase 0.0044 7 30.00 116 162
ATP_bind_1 Conserved hypothetical ATP binding protein 0.024 5 20.20 117 153

221

Arf
Pox_A32
Septin
G-alpha
NB-ARC
ABC_tran
AAA_24
AAA_7
Ras
Roc
RsgA_GTPase
MMR_HSR1
ATPase
RNA_helicase
AAA_33
ATP_bind_1
ArgoMid
G-alpha
RsgA_GTPase
ATP_bind_1

References:

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

G-alpha
8073283 Structures of active conformations of Gi alpha 1 and the mechanism of GTP hydrolysis. Science 1994;265:1405-1412.
8851656 How G proteins work: a continuing story. Trends Biochem Sci 1996;21:41-44.

Septin
12665577 Molecular dissection of a yeast septin: distinct domains are required for septin interaction, localization, and function. Mol Cell Biol 2003;23:2762-2777.
14611653 The septins. Genome Biol 2003;4:236.

RsgA_GTPase

ArgoMid

Ras
11387043 The Rab GTPase family. Genome Biol 2001;2:REVIEWS3007.

AAA_7

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

Arf
7990966 Structure of the human ADP-ribosylation factor 1 complexed with GDP. Nature 1994;372:704-708.
7759471 Structure and function of ARF proteins: Activators of cholera toxin and critical components of intracellular vesicular transport processes. J. Biol. Chem. 1995;270:12327-12330.
7770914 Arf proteins: the membrane traffic police? Trends Biochem Sci 1995;20:147-150.
1899243 Human ADP-ribosylation factors. A functionally conserved family of GTP-binding proteins. J Biol Chem 1991;266:2606-2614.

AAA_33

ATPase

ATP_bind_1

Roc

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA_24

Pox_A32
9621036 DNA packaging mutant: repression of the vaccinia virus A32 gene results in noninfectious, DNA-deficient, spherical, enveloped particles. J Virol 1998;72:5769-5780.

Domain	Description	Evalue	Bits	GA	Start	End
Arf	ADP-ribosylation factor family	3.1E-14	43	20.30	13	139
Pox_A32	Poxvirus A32 protein	2.5E-05	14	20.50	13	41
Septin	Septin	0.0002	11	20.00	13	33
G-alpha	G-protein alpha subunit	0.0039	6	20.10	13	32
NB-ARC	NB-ARC domain	0.00018	11	23.50	13	48
ABC_tran	ABC transporter	0.0006	11	23.10	15	39
AAA_24	AAA domain	7.8E-05	13	27.00	15	32
AAA_7	P-loop containing dynein motor region	0.00019	11	25.80	15	44
Ras	Ras family	0	169	20.80	15	171
Roc	Ras of Complex, Roc, domain of DAPkinase	2E-32	102	27.00	15	128
RsgA_GTPase	RsgA GTPase	0.015	5	30.00	16	32
MMR_HSR1	GTPase of unknown function	7.9E-07	19	24.50	16	126
ATPase	KaiC	5.5E-05	13	26.60	17	58
RNA_helicase	RNA helicase	3.6E-08	24	21.50	17	139
AAA_33	AAA domain	0.00032	11	27.00	17	34
ATP_bind_1	Conserved hypothetical ATP binding protein	0.015	5	20.20	18	33
ArgoMid	Mid domain of argonaute	0.00028	11	27.50	87	135
G-alpha	G-protein alpha subunit	0.072	2	20.10	114	142
RsgA_GTPase	RsgA GTPase	0.0044	7	30.00	116	162
ATP_bind_1	Conserved hypothetical ATP binding protein	0.024	5	20.20	117	153