c2pfam

AT1G27940.1 :

Domain Description Evalue Bits GA Start End
ABC_membrane ABC transporter transmembrane region 0 180 22.00 47 320
RsgA_GTPase RsgA GTPase 1.7E-05 16 30.00 386 420
AAA_29 P-loop containing region of AAA domain 2.6E-06 19 27.00 389 416
ABC_tran ABC transporter 1.7E-38 124 23.10 390 538
AAA_23 AAA domain 9.4E-05 14 27.00 390 416
AAA_7 P-loop containing dynein motor region 0.00084 10 25.80 394 421
P-loop_TraG TraG P-loop domain 0.0015 8 25.80 396 433
AAA_25 AAA domain 0.046 5 27.00 396 416
AAA_16 AAA ATPase domain 3E-05 16 32.60 398 554
AAA_30 AAA domain 9.9E-05 13 27.00 398 553
Mg_chelatase Magnesium chelatase, subunit ChlI 0.0016 9 20.30 399 446
APS_kinase Adenylylsulphate kinase 0.0015 10 20.70 399 438
AAA_19 AAA domain 0.22 3 25.10 399 423
AAA_24 AAA domain 0.013 7 27.00 400 421
AAA_15 AAA ATPase domain 0.0033 8 32.10 400 426
AAA_22 AAA domain 0.00012 14 27.00 402 551
G-alpha G-protein alpha subunit 0.00062 10 20.10 402 426
DUF87 Domain of unknown function DUF87 0.015 7 20.90 402 433
MMR_HSR1 GTPase of unknown function 0.038 5 24.50 402 417
DUF3987 Protein of unknown function (DUF3987) 0.08 3 27.00 402 422
SRP54 SRP54-type protein, GTPase domain 0.018 6 20.50 402 437
TniB Bacterial TniB protein 0.14 3 20.10 402 425
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0059 8 27.00 403 423
ATP_bind_1 Conserved hypothetical ATP binding protein 0.0059 8 20.20 404 424
AAA_5 AAA domain (dynein-related subfamily) 0.033 6 20.80 404 426
Rad17 Rad17 cell cycle checkpoint protein 0.013 7 19.70 404 501
AAA_33 AAA domain 0.0036 9 27.00 404 417
AAA ATPase family associated with various cellular activities (AAA) 0.00064 12 20.80 404 561
RNA_helicase RNA helicase 0.067 5 21.50 404 418
AAA_17 AAA domain 0.04 6 27.00 405 423
Zeta_toxin Zeta toxin 0.00098 10 20.10 405 440
AAA_18 AAA domain 0.043 6 29.40 405 421
Cytidylate_kin Cytidylate kinase 0.043 5 20.40 405 419
NTPase_1 NTPase 0.13 3 23.90 405 421
SMC_N RecF/RecN/SMC N terminal domain 3.6E-08 24 40.00 416 580
ABC_ATPase Predicted ATPase of the ABC class 1.5E-05 15 19.30 485 540
AAA_5 AAA domain (dynein-related subfamily) 0.85 1 20.80 496 559
NTPase_1 NTPase 0.34 2 23.90 520 584
TniB Bacterial TniB protein 0.67 1 20.10 520 546
SbcCD_C Putative exonuclease SbcCD, C subunit 0.0052 8 27.00 524 550
Zeta_toxin Zeta toxin 0.057 4 20.10 537 577
ABC_membrane ABC transporter transmembrane region 0 177 22.00 686 954
AAA_7 P-loop containing dynein motor region 0.00076 10 25.80 1014 1058
P-loop_TraG TraG P-loop domain 0.0015 8 25.80 1020 1057
RsgA_GTPase RsgA GTPase 0.0015 10 30.00 1020 1052
AAA_23 AAA domain 0.0077 8 27.00 1021 1049
AAA_29 P-loop containing region of AAA domain 1.8E-05 16 27.00 1022 1049
SMC_N RecF/RecN/SMC N terminal domain 3.5E-08 24 40.00 1022 1212
AAA_16 AAA ATPase domain 8.6E-08 24 32.60 1023 1187
ABC_tran ABC transporter 7.9E-37 118 23.10 1023 1171
Mg_chelatase Magnesium chelatase, subunit ChlI 0.022 5 20.30 1026 1075
AAA_25 AAA domain 0.05 4 27.00 1029 1048
AAA_19 AAA domain 0.022 6 25.10 1031 1057
DUF87 Domain of unknown function DUF87 0.00065 11 20.90 1032 1054
AAA_24 AAA domain 0.0034 8 27.00 1032 1094
AAA_22 AAA domain 1.6E-05 17 27.00 1032 1182
Zeta_toxin Zeta toxin 0.0072 7 20.10 1032 1073
AAA_30 AAA domain 0.00032 12 27.00 1033 1187
Rad17 Rad17 cell cycle checkpoint protein 0.019 6 19.70 1033 1053
TniB Bacterial TniB protein 0.11 3 20.10 1033 1050
G-alpha G-protein alpha subunit 0.007 7 20.10 1034 1088
AAA_15 AAA ATPase domain 0.00069 11 32.10 1034 1121
NTPase_1 NTPase 0.09 4 23.90 1035 1055
APS_kinase Adenylylsulphate kinase 0.18 3 20.70 1035 1072
MMR_HSR1 GTPase of unknown function 0.049 5 24.50 1035 1053
SRP54 SRP54-type protein, GTPase domain 0.053 4 20.50 1035 1067
DUF3987 Protein of unknown function (DUF3987) 0.0061 7 27.00 1035 1055
Cytidylate_kin Cytidylate kinase 0.0043 8 20.40 1036 1104
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0041 8 27.00 1036 1052
AAA_5 AAA domain (dynein-related subfamily) 0.029 6 20.80 1036 1056
ATP_bind_1 Conserved hypothetical ATP binding protein 0.004 8 20.20 1037 1057
AAA_18 AAA domain 0.013 7 29.40 1037 1053
AAA_33 AAA domain 0.0054 8 27.00 1037 1050
AAA ATPase family associated with various cellular activities (AAA) 0.00058 12 20.80 1037 1194
RNA_helicase RNA helicase 0.057 5 21.50 1037 1053
AAA_17 AAA domain 0.099 4 27.00 1038 1056
ABC_ATPase Predicted ATPase of the ABC class 0.01 6 19.30 1117 1173
SbcCD_C Putative exonuclease SbcCD, C subunit 0.021 7 27.00 1131 1184
NTPase_1 NTPase 0.31 2 23.90 1132 1206

1245

ABC_membrane
RsgA_GTPase
AAA_29
ABC_tran
AAA_23
AAA_7
P-loop_TraG
AAA_25
AAA_16
AAA_30
Mg_chelatase
APS_kinase
AAA_19
AAA_24
AAA_15
AAA_22
G-alpha
DUF87
MMR_HSR1
DUF3987
SRP54
TniB
AAA_21
ATP_bind_1
AAA_5
Rad17
AAA_33
AAA
RNA_helicase
AAA_17
Zeta_toxin
AAA_18
Cytidylate_kin
NTPase_1
SMC_N
ABC_ATPase
AAA_5
NTPase_1
TniB
SbcCD_C
Zeta_toxin
ABC_membrane
AAA_7
P-loop_TraG
RsgA_GTPase
AAA_23
AAA_29
SMC_N
AAA_16
ABC_tran
Mg_chelatase
AAA_25
AAA_19
DUF87
AAA_24
AAA_22
Zeta_toxin
AAA_30
Rad17
TniB
G-alpha
AAA_15
NTPase_1
APS_kinase
MMR_HSR1
SRP54
DUF3987
Cytidylate_kin
AAA_21
AAA_5
ATP_bind_1
AAA_18
AAA_33
AAA
RNA_helicase
AAA_17
ABC_ATPase
SbcCD_C
NTPase_1

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

SbcCD_C

P-loop_TraG

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

ATP_bind_1

TniB
8195081 Transposon Tn5090 of plasmid R751, which carries an integron, is related to Tn7, Mu, and the retroelements. J Bacteriol 1994;176:3257-3268.
8594337 Four genes, two ends, and a res region are involved in transposition of Tn5053: a paradigm for a novel family of transposons carrying either a mer operon or an integron. Mol Microbiol 1995;17:1189-1200.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

SRP54
9002525 Crystal structure of the NG domain from the signal-recognition particle receptor FtsY. Nature 1997;385:365-368.

G-alpha
8073283 Structures of active conformations of Gi alpha 1 and the mechanism of GTP hydrolysis. Science 1994;265:1405-1412.
8851656 How G proteins work: a continuing story. Trends Biochem Sci 1996;21:41-44.

NTPase_1

Cytidylate_kin
9862805 Structures of escherichia coli CMP kinase alone and in complex with CDP: a new fold of the nucleoside monophosphate binding domain and insights into cytosine nucleotide specificity. Structure 1998;6:1517-1527.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_7

AAA_33

AAA_30

AAA_29

AAA_25

AAA_24

AAA_23

AAA_22

AAA_21

AAA_19

AAA_18

AAA_17

AAA_16

AAA_15

APS_kinase
9786849 Adenosine 5'-phosphosulfate kinase from Penicillium chrysogenum. site- directed mutagenesis at putative phosphoryl-accepting and ATP P-loop residues. J Biol Chem 1998;273:28583-28589.

DUF3987

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

ABC_membrane

ABC_ATPase

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

RsgA_GTPase

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

DUF87

Domain	Description	Evalue	Bits	GA	Start	End
ABC_membrane	ABC transporter transmembrane region	0	180	22.00	47	320
RsgA_GTPase	RsgA GTPase	1.7E-05	16	30.00	386	420
AAA_29	P-loop containing region of AAA domain	2.6E-06	19	27.00	389	416
ABC_tran	ABC transporter	1.7E-38	124	23.10	390	538
AAA_23	AAA domain	9.4E-05	14	27.00	390	416
AAA_7	P-loop containing dynein motor region	0.00084	10	25.80	394	421
P-loop_TraG	TraG P-loop domain	0.0015	8	25.80	396	433
AAA_25	AAA domain	0.046	5	27.00	396	416
AAA_16	AAA ATPase domain	3E-05	16	32.60	398	554
AAA_30	AAA domain	9.9E-05	13	27.00	398	553
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.0016	9	20.30	399	446
APS_kinase	Adenylylsulphate kinase	0.0015	10	20.70	399	438
AAA_19	AAA domain	0.22	3	25.10	399	423
AAA_24	AAA domain	0.013	7	27.00	400	421
AAA_15	AAA ATPase domain	0.0033	8	32.10	400	426
AAA_22	AAA domain	0.00012	14	27.00	402	551
G-alpha	G-protein alpha subunit	0.00062	10	20.10	402	426
DUF87	Domain of unknown function DUF87	0.015	7	20.90	402	433
MMR_HSR1	GTPase of unknown function	0.038	5	24.50	402	417
DUF3987	Protein of unknown function (DUF3987)	0.08	3	27.00	402	422
SRP54	SRP54-type protein, GTPase domain	0.018	6	20.50	402	437
TniB	Bacterial TniB protein	0.14	3	20.10	402	425
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0059	8	27.00	403	423
ATP_bind_1	Conserved hypothetical ATP binding protein	0.0059	8	20.20	404	424
AAA_5	AAA domain (dynein-related subfamily)	0.033	6	20.80	404	426
Rad17	Rad17 cell cycle checkpoint protein	0.013	7	19.70	404	501
AAA_33	AAA domain	0.0036	9	27.00	404	417
AAA	ATPase family associated with various cellular activities (AAA)	0.00064	12	20.80	404	561
RNA_helicase	RNA helicase	0.067	5	21.50	404	418
AAA_17	AAA domain	0.04	6	27.00	405	423
Zeta_toxin	Zeta toxin	0.00098	10	20.10	405	440
AAA_18	AAA domain	0.043	6	29.40	405	421
Cytidylate_kin	Cytidylate kinase	0.043	5	20.40	405	419
NTPase_1	NTPase	0.13	3	23.90	405	421
SMC_N	RecF/RecN/SMC N terminal domain	3.6E-08	24	40.00	416	580
ABC_ATPase	Predicted ATPase of the ABC class	1.5E-05	15	19.30	485	540
AAA_5	AAA domain (dynein-related subfamily)	0.85	1	20.80	496	559
NTPase_1	NTPase	0.34	2	23.90	520	584
TniB	Bacterial TniB protein	0.67	1	20.10	520	546
SbcCD_C	Putative exonuclease SbcCD, C subunit	0.0052	8	27.00	524	550
Zeta_toxin	Zeta toxin	0.057	4	20.10	537	577
ABC_membrane	ABC transporter transmembrane region	0	177	22.00	686	954
AAA_7	P-loop containing dynein motor region	0.00076	10	25.80	1014	1058
P-loop_TraG	TraG P-loop domain	0.0015	8	25.80	1020	1057
RsgA_GTPase	RsgA GTPase	0.0015	10	30.00	1020	1052
AAA_23	AAA domain	0.0077	8	27.00	1021	1049
AAA_29	P-loop containing region of AAA domain	1.8E-05	16	27.00	1022	1049
SMC_N	RecF/RecN/SMC N terminal domain	3.5E-08	24	40.00	1022	1212
AAA_16	AAA ATPase domain	8.6E-08	24	32.60	1023	1187
ABC_tran	ABC transporter	7.9E-37	118	23.10	1023	1171
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.022	5	20.30	1026	1075
AAA_25	AAA domain	0.05	4	27.00	1029	1048
AAA_19	AAA domain	0.022	6	25.10	1031	1057
DUF87	Domain of unknown function DUF87	0.00065	11	20.90	1032	1054
AAA_24	AAA domain	0.0034	8	27.00	1032	1094
AAA_22	AAA domain	1.6E-05	17	27.00	1032	1182
Zeta_toxin	Zeta toxin	0.0072	7	20.10	1032	1073
AAA_30	AAA domain	0.00032	12	27.00	1033	1187
Rad17	Rad17 cell cycle checkpoint protein	0.019	6	19.70	1033	1053
TniB	Bacterial TniB protein	0.11	3	20.10	1033	1050
G-alpha	G-protein alpha subunit	0.007	7	20.10	1034	1088
AAA_15	AAA ATPase domain	0.00069	11	32.10	1034	1121
NTPase_1	NTPase	0.09	4	23.90	1035	1055
APS_kinase	Adenylylsulphate kinase	0.18	3	20.70	1035	1072
MMR_HSR1	GTPase of unknown function	0.049	5	24.50	1035	1053
SRP54	SRP54-type protein, GTPase domain	0.053	4	20.50	1035	1067
DUF3987	Protein of unknown function (DUF3987)	0.0061	7	27.00	1035	1055
Cytidylate_kin	Cytidylate kinase	0.0043	8	20.40	1036	1104
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0041	8	27.00	1036	1052
AAA_5	AAA domain (dynein-related subfamily)	0.029	6	20.80	1036	1056
ATP_bind_1	Conserved hypothetical ATP binding protein	0.004	8	20.20	1037	1057
AAA_18	AAA domain	0.013	7	29.40	1037	1053
AAA_33	AAA domain	0.0054	8	27.00	1037	1050
AAA	ATPase family associated with various cellular activities (AAA)	0.00058	12	20.80	1037	1194
RNA_helicase	RNA helicase	0.057	5	21.50	1037	1053
AAA_17	AAA domain	0.099	4	27.00	1038	1056
ABC_ATPase	Predicted ATPase of the ABC class	0.01	6	19.30	1117	1173
SbcCD_C	Putative exonuclease SbcCD, C subunit	0.021	7	27.00	1131	1184
NTPase_1	NTPase	0.31	2	23.90	1132	1206