c2pfam

AT5G56130.1 :

Domain Description Evalue Bits GA Start End
WD40 WD domain, G-beta repeat 1.8E-11 34 21.00 14 48
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 2.3E-05 14 22.90 15 50
IKI3 IKI3 family 0.00043 8 19.30 17 92
eIF2A Eukaryotic translation initiation factor eIF2A 2.9E-05 14 20.50 20 124
Coatomer_WDAD Coatomer WD associated region 0.46 -1 25.10 21 41
WD40_like WD40-like domain 0.14 1 40.00 22 51
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.00024 10 29.50 24 113
Nup160 Nucleoporin Nup120/160 0.0022 6 19.20 35 83
eIF2A Eukaryotic translation initiation factor eIF2A 1.1E-05 15 20.50 59 167
SdiA-regulated SdiA-regulated 8E-05 11 21.20 59 139
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 3.3E-06 17 22.90 61 109
WD40 WD domain, G-beta repeat 1.9E-07 22 21.00 61 95
Nup160 Nucleoporin Nup120/160 2.2E-05 13 19.20 78 108
IKI3 IKI3 family 0.077 0 19.30 88 132
MMS1_N Mono-functional DNA-alkylating methyl methanesulfonate N-term 1 -3 28.70 89 155
WD40_like WD40-like domain 0.015 4 40.00 113 139
Coatomer_WDAD Coatomer WD associated region 0.00032 9 25.10 113 254
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 1.8E-06 18 22.90 113 159
WD40 WD domain, G-beta repeat 0.59 1 21.00 114 130
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.00082 9 22.90 149 194
WD40 WD domain, G-beta repeat 2.4E-08 24 21.00 182 219
eIF2A Eukaryotic translation initiation factor eIF2A 3.3E-05 13 20.50 194 310
WD40_like WD40-like domain 0.035 3 40.00 194 225
Ge1_WD40 WD40 region of Ge1, enhancer of mRNA-decapping protein 0.49 -1 29.50 196 220
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.013 6 22.90 197 229
MMS1_N Mono-functional DNA-alkylating methyl methanesulfonate N-term 0.00017 10 28.70 197 223
Nup160 Nucleoporin Nup120/160 0.22 0 19.20 210 258
WD40 WD domain, G-beta repeat 0.014 6 21.00 225 254
CNH CNH domain 0.00012 11 20.20 231 274
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 1.9E-07 21 22.90 234 283
Coatomer_WDAD Coatomer WD associated region 0.0099 4 25.10 241 296
WD40 WD domain, G-beta repeat 0.081 4 21.00 278 296
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.14 2 22.90 281 296

315

WD40
ANAPC4_WD40
IKI3
eIF2A
Coatomer_WDAD
WD40_like
Ge1_WD40
Nup160
eIF2A
SdiA-regulated
ANAPC4_WD40
WD40
Nup160
IKI3
MMS1_N
WD40_like
Coatomer_WDAD
ANAPC4_WD40
WD40
ANAPC4_WD40
WD40
eIF2A
WD40_like
Ge1_WD40
ANAPC4_WD40
MMS1_N
Nup160
WD40
CNH
ANAPC4_WD40
Coatomer_WDAD
WD40
ANAPC4_WD40

References:

ANAPC4_WD40

MMS1_N

Ge1_WD40

CNH

WD40_like

Nup160
8557736 Nup120p: a yeast nucleoporin required for NPC distribution and mRNA transport. J Cell Biol. 1995;131:1659-1675.
11684705 Novel vertebrate nucleoporins Nup133 and Nup160 play a role in mRNA export. J Cell Biol 2001;155:339-354.
17360435 Cell-cycle-dependent phosphorylation of the nuclear pore Nup107-160 subcomplex. Proc Natl Acad Sci U S A. 2007;104:3811-3816.

Coatomer_WDAD

IKI3
10024884 Elongator, a multisubunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation. Mol Cell 1999;3:109-118.

WD40
8090199 The ancient regulatory-protein family of WD-repeat proteins. Nature 1994;371:297-300.

eIF2A
12133843 Characterization of mammalian eIF2A and identification of the yeast homolog. J Biol Chem. 2002;277:37079-37087.

SdiA-regulated
9495757 Salmonella typhimurium encodes an SdiA homolog, a putative quorum sensor of the LuxR family, that regulates genes on the virulence plasmid. J Bacteriol 1998;180:1185-1193.

Domain	Description	Evalue	Bits	GA	Start	End
WD40	WD domain, G-beta repeat	1.8E-11	34	21.00	14	48
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	2.3E-05	14	22.90	15	50
IKI3	IKI3 family	0.00043	8	19.30	17	92
eIF2A	Eukaryotic translation initiation factor eIF2A	2.9E-05	14	20.50	20	124
Coatomer_WDAD	Coatomer WD associated region	0.46	-1	25.10	21	41
WD40_like	WD40-like domain	0.14	1	40.00	22	51
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.00024	10	29.50	24	113
Nup160	Nucleoporin Nup120/160	0.0022	6	19.20	35	83
eIF2A	Eukaryotic translation initiation factor eIF2A	1.1E-05	15	20.50	59	167
SdiA-regulated	SdiA-regulated	8E-05	11	21.20	59	139
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	3.3E-06	17	22.90	61	109
WD40	WD domain, G-beta repeat	1.9E-07	22	21.00	61	95
Nup160	Nucleoporin Nup120/160	2.2E-05	13	19.20	78	108
IKI3	IKI3 family	0.077	0	19.30	88	132
MMS1_N	Mono-functional DNA-alkylating methyl methanesulfonate N-term	1	-3	28.70	89	155
WD40_like	WD40-like domain	0.015	4	40.00	113	139
Coatomer_WDAD	Coatomer WD associated region	0.00032	9	25.10	113	254
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	1.8E-06	18	22.90	113	159
WD40	WD domain, G-beta repeat	0.59	1	21.00	114	130
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.00082	9	22.90	149	194
WD40	WD domain, G-beta repeat	2.4E-08	24	21.00	182	219
eIF2A	Eukaryotic translation initiation factor eIF2A	3.3E-05	13	20.50	194	310
WD40_like	WD40-like domain	0.035	3	40.00	194	225
Ge1_WD40	WD40 region of Ge1, enhancer of mRNA-decapping protein	0.49	-1	29.50	196	220
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.013	6	22.90	197	229
MMS1_N	Mono-functional DNA-alkylating methyl methanesulfonate N-term	0.00017	10	28.70	197	223
Nup160	Nucleoporin Nup120/160	0.22	0	19.20	210	258
WD40	WD domain, G-beta repeat	0.014	6	21.00	225	254
CNH	CNH domain	0.00012	11	20.20	231	274
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	1.9E-07	21	22.90	234	283
Coatomer_WDAD	Coatomer WD associated region	0.0099	4	25.10	241	296
WD40	WD domain, G-beta repeat	0.081	4	21.00	278	296
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.14	2	22.90	281	296