c2pfam

AT5G57160.1 :

Domain Description Evalue Bits GA Start End
DNA_ligase_A_N DNA ligase N terminus 0 127 21.10 6 187
DNA_ligase_A_M ATP dependent DNA ligase domain 0 143 20.20 227 442
mRNA_cap_enzyme mRNA capping enzyme, catalytic domain 0.12 2 20.70 241 306
RNA_ligase RNA ligase 1.7E-11 34 20.90 247 442
mRNA_cap_enzyme mRNA capping enzyme, catalytic domain 0.00027 10 20.70 334 435
DNA_ligase_A_C ATP dependent DNA ligase C terminal region 3.1E-16 49 21.00 466 585
BRCT_2 BRCT domain, a BRCA1 C-terminus domain 2.3E-19 59 27.30 653 734
BRCT BRCA1 C Terminus (BRCT) domain 2E-10 30 21.20 653 725
PTCB-BRCT twin BRCT domain 9.1E-13 37 21.40 669 712
DNA_ligase_IV DNA ligase IV 4.4E-06 16 21.20 749 774
BRCT_2 BRCT domain, a BRCA1 C-terminus domain 0.0017 8 27.30 835 902
BRCT BRCA1 C Terminus (BRCT) domain 0.047 4 21.20 839 896

1219

DNA_ligase_A_N
DNA_ligase_A_M
mRNA_cap_enzyme
RNA_ligase
mRNA_cap_enzyme
DNA_ligase_A_C
BRCT_2
BRCT
PTCB-BRCT
DNA_ligase_IV
BRCT_2
BRCT

References:

PTCB-BRCT

DNA_ligase_IV
11702069 Crystal structure of an Xrcc4-DNA ligase IV complex. Nat Struct Biol. 2001;8:1015-1019.

DNA_ligase_A_N
9016621 Domain structure of vaccinia DNA ligase. Nucleic Acids Res 1997;25:727-734.

DNA_ligase_A_M
8653795 Crystal structure of an ATP-dependent DNA ligase from bacteriophage T7. Cell 1996;85:607-615.
9363683 Mammalian DNA ligases. Bioessays 1997;19:893-901.
10222208 Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches. J Mol Biol 1999;287:1023-1040.

DNA_ligase_A_C
9016621 Domain structure of vaccinia DNA ligase. Nucleic Acids Res 1997;25:727-734.

BRCT_2

mRNA_cap_enzyme
9160746 X-ray crystallography reveals a large conformational change during guanyl transfer by mRNA capping enzymes. Cell 1997;89:545-553.

RNA_ligase
17018278 RNA ligase structures reveal the basis for RNA specificity and conformational changes that drive ligation forward. Cell. 2006;127:71-84.

BRCT
8673121 BRCA1 protein products ...Functional motifs... Nature Genet 1996;13:266-268.
15501676 Interactions between BRCT repeats and phosphoproteins: tangled up in two. Trends Biochem Sci. 2004;29:579-585.
11573086 Crystal structure of the BRCT repeat region from the breast cancer-associated protein BRCA1. Nat Struct Biol. 2001;8:838-842.
15133503 Structural basis of phosphopeptide recognition by the BRCT domain of BRCA1. Nat Struct Mol Biol. 2004;11:519-525.
14534301 Detection of protein folding defects caused by BRCA1-BRCT truncation and missense mutations. J Biol Chem. 2003;278:53007-53016.

Domain	Description	Evalue	Bits	GA	Start	End
DNA_ligase_A_N	DNA ligase N terminus	0	127	21.10	6	187
DNA_ligase_A_M	ATP dependent DNA ligase domain	0	143	20.20	227	442
mRNA_cap_enzyme	mRNA capping enzyme, catalytic domain	0.12	2	20.70	241	306
RNA_ligase	RNA ligase	1.7E-11	34	20.90	247	442
mRNA_cap_enzyme	mRNA capping enzyme, catalytic domain	0.00027	10	20.70	334	435
DNA_ligase_A_C	ATP dependent DNA ligase C terminal region	3.1E-16	49	21.00	466	585
BRCT_2	BRCT domain, a BRCA1 C-terminus domain	2.3E-19	59	27.30	653	734
BRCT	BRCA1 C Terminus (BRCT) domain	2E-10	30	21.20	653	725
PTCB-BRCT	twin BRCT domain	9.1E-13	37	21.40	669	712
DNA_ligase_IV	DNA ligase IV	4.4E-06	16	21.20	749	774
BRCT_2	BRCT domain, a BRCA1 C-terminus domain	0.0017	8	27.30	835	902
BRCT	BRCA1 C Terminus (BRCT) domain	0.047	4	21.20	839	896