c2pfam

AT5G58870.1 :

Domain Description Evalue Bits GA Start End
FtsH_ext FtsH Extracellular 6.7E-13 39 25.50 140 266
AAA_14 AAA domain 0.013 6 27.00 188 231
DUF815 Protein of unknown function (DUF815) 0.0004 10 20.10 325 385
AAA_16 AAA ATPase domain 2.4E-05 15 32.60 360 384
TIP49 TIP49 C-terminus 2.6E-06 17 23.80 362 399
RuvB_N Holliday junction DNA helicase ruvB N-terminus 2E-06 18 20.00 362 438
Mg_chelatase Magnesium chelatase, subunit ChlI 0.00017 11 20.30 363 383
AAA_5 AAA domain (dynein-related subfamily) 5.9E-07 20 20.80 364 487
AAA_22 AAA domain 0.00022 12 27.00 365 388
AAA_33 AAA domain 2E-05 15 27.00 365 393
AAA_14 AAA domain 5.7E-05 13 27.00 365 455
AAA_2 AAA domain (Cdc48 subfamily) 9.1E-08 22 20.60 365 457
AAA ATPase family associated with various cellular activities (AAA) 0 147 20.80 365 498
AAA_17 AAA domain 5.2E-05 14 27.00 368 437
AAA_22 AAA domain 0.047 4 27.00 409 475
AAA_16 AAA ATPase domain 0.062 4 32.60 410 440
AAA_lid_3 AAA+ lid domain 7.5E-15 45 27.20 523 565
AAA_2 AAA domain (Cdc48 subfamily) 0.93 0 20.60 574 647
Peptidase_M41 Peptidase family M41 0 125 20.60 584 776
RuvB_N Holliday junction DNA helicase ruvB N-terminus 0.12 2 20.00 638 667

806

FtsH_ext
AAA_14
DUF815
AAA_16
TIP49
RuvB_N
Mg_chelatase
AAA_5
AAA_22
AAA_33
AAA_14
AAA_2
AAA
AAA_17
AAA_22
AAA_16
AAA_lid_3
AAA_2
Peptidase_M41
RuvB_N

References:

DUF815

AAA_16

AAA_14

AAA_17

AAA_lid_3

FtsH_ext
12667449 Lack of a robust unfoldase activity confers a unique level of substrate specificity to the universal AAA protease FtsH. Mol Cell 2003;11:659-669.
12732516 The ftsH gene of the wine bacterium Oenococcus oeni is involved in protection against environmental stress. Appl Environ Microbiol 2003;69:2512-2520.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

Peptidase_M41

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

AAA_33

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_22

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

Domain	Description	Evalue	Bits	GA	Start	End
FtsH_ext	FtsH Extracellular	6.7E-13	39	25.50	140	266
AAA_14	AAA domain	0.013	6	27.00	188	231
DUF815	Protein of unknown function (DUF815)	0.0004	10	20.10	325	385
AAA_16	AAA ATPase domain	2.4E-05	15	32.60	360	384
TIP49	TIP49 C-terminus	2.6E-06	17	23.80	362	399
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	2E-06	18	20.00	362	438
Mg_chelatase	Magnesium chelatase, subunit ChlI	0.00017	11	20.30	363	383
AAA_5	AAA domain (dynein-related subfamily)	5.9E-07	20	20.80	364	487
AAA_22	AAA domain	0.00022	12	27.00	365	388
AAA_33	AAA domain	2E-05	15	27.00	365	393
AAA_14	AAA domain	5.7E-05	13	27.00	365	455
AAA_2	AAA domain (Cdc48 subfamily)	9.1E-08	22	20.60	365	457
AAA	ATPase family associated with various cellular activities (AAA)	0	147	20.80	365	498
AAA_17	AAA domain	5.2E-05	14	27.00	368	437
AAA_22	AAA domain	0.047	4	27.00	409	475
AAA_16	AAA ATPase domain	0.062	4	32.60	410	440
AAA_lid_3	AAA+ lid domain	7.5E-15	45	27.20	523	565
AAA_2	AAA domain (Cdc48 subfamily)	0.93	0	20.60	574	647
Peptidase_M41	Peptidase family M41	0	125	20.60	584	776
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	0.12	2	20.00	638	667