c2pfam

AT1G28440.1 :

Domain Description Evalue Bits GA Start End
LRRNT_2 Leucine rich repeat N-terminal domain 2.4E-15 46 20.70 17 55
LRR_8 Leucine rich repeat 1.8E-08 24 27.00 61 120
LRR_4 Leucine Rich repeats (2 copies) 0.042 4 27.00 63 96
LRR_4 Leucine Rich repeats (2 copies) 6.1E-06 16 27.00 85 121
LRR_8 Leucine rich repeat 1.1E-09 28 27.00 85 144
LRR_1 Leucine Rich Repeat 0.31 2 20.60 85 101
LRR_6 Leucine Rich repeat 0.0028 8 23.40 107 123
LRR_4 Leucine Rich repeats (2 copies) 3.4E-08 23 27.00 108 148
LRR_1 Leucine Rich Repeat 0.002 9 20.60 109 128
LRR_4 Leucine Rich repeats (2 copies) 5.3E-07 20 27.00 132 168
LRR_8 Leucine rich repeat 2.2E-10 30 27.00 132 191
LRR_6 Leucine Rich repeat 0.0017 8 23.40 132 147
LRR_1 Leucine Rich Repeat 0.00021 12 20.60 134 155
LRR_1 Leucine Rich Repeat 0.12 3 20.60 157 177
LRR_4 Leucine Rich repeats (2 copies) 1.1E-05 15 27.00 157 193
LRR_6 Leucine Rich repeat 0.063 3 23.40 180 193
LRR_4 Leucine Rich repeats (2 copies) 0.013 6 27.00 182 222
LRR_1 Leucine Rich Repeat 0.0044 8 20.60 182 204
LRR_8 Leucine rich repeat 0.00056 9 27.00 201 241
LRR_1 Leucine Rich Repeat 0.34 2 20.60 206 226
LRR_6 Leucine Rich repeat 0.17 2 23.40 229 241
LRR_8 Leucine rich repeat 3.8E-06 16 27.00 230 289
LRR_1 Leucine Rich Repeat 0.88 1 20.60 231 252
LRR_1 Leucine Rich Repeat 0.18 3 20.60 258 276
LRR_4 Leucine Rich repeats (2 copies) 1.7E-05 15 27.00 258 293
LRR_1 Leucine Rich Repeat 0.066 4 20.60 278 298
LRR_1 Leucine Rich Repeat 0.023 5 20.60 302 320
LRR_4 Leucine Rich repeats (2 copies) 0.008 6 27.00 302 336
LRR_8 Leucine rich repeat 0.0012 8 27.00 302 336
LRR_8 Leucine rich repeat 0.029 4 27.00 324 361
LRR_4 Leucine Rich repeats (2 copies) 0.044 4 27.00 324 364
LRR_6 Leucine Rich repeat 0.7 0 23.40 347 362
LRR_1 Leucine Rich Repeat 0.31 2 20.60 350 369
LRR_8 Leucine rich repeat 2.3E-10 30 27.00 373 431
LRR_1 Leucine Rich Repeat 0.83 1 20.60 374 393
LRR_6 Leucine Rich repeat 0.23 2 23.40 395 410
LRR_4 Leucine Rich repeats (2 copies) 0.0072 6 27.00 397 435
LRR_8 Leucine rich repeat 6.5E-07 19 27.00 444 504
LRR_4 Leucine Rich repeats (2 copies) 0.00022 11 27.00 445 484
LRR_1 Leucine Rich Repeat 0.24 2 20.60 445 467
LRR_4 Leucine Rich repeats (2 copies) 0.00046 10 27.00 494 532
LRR_8 Leucine rich repeat 2.6E-10 30 27.00 517 575
LRR_1 Leucine Rich Repeat 0.012 6 20.60 517 539
LRR_6 Leucine Rich repeat 0.017 5 23.40 517 531
LRR_6 Leucine Rich repeat 0.13 2 23.40 542 550
LRR_1 Leucine Rich Repeat 0.0032 8 20.60 542 563
LRR_4 Leucine Rich repeats (2 copies) 0.00012 12 27.00 542 580
LRR_6 Leucine Rich repeat 0.017 5 23.40 562 577
LRR_1 Leucine Rich Repeat 0.0096 6 20.60 564 583
ABC1 ABC1 family 9.8E-05 12 20.60 669 706
Pkinase Protein kinase domain 0 143 20.40 678 955
PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase 0 129 23.10 679 958
APH Phosphotransferase enzyme family 0.015 5 22.40 681 785
Pkinase_fungal Fungal protein kinase 2.5E-05 13 24.10 792 842
APH Phosphotransferase enzyme family 0.00081 9 22.40 810 838

996

LRRNT_2
LRR_8
LRR_4
LRR_4
LRR_8
LRR_1
LRR_6
LRR_4
LRR_1
LRR_4
LRR_8
LRR_6
LRR_1
LRR_1
LRR_4
LRR_6
LRR_4
LRR_1
LRR_8
LRR_1
LRR_6
LRR_8
LRR_1
LRR_1
LRR_4
LRR_1
LRR_1
LRR_4
LRR_8
LRR_8
LRR_4
LRR_6
LRR_1
LRR_8
LRR_1
LRR_6
LRR_4
LRR_8
LRR_4
LRR_1
LRR_4
LRR_8
LRR_1
LRR_6
LRR_6
LRR_1
LRR_4
LRR_6
LRR_1
ABC1
Pkinase
PK_Tyr_Ser-Thr
APH
Pkinase_fungal
APH

References:

LRR_8

ABC1
1648478 ABC1, a novel yeast nuclear gene has a dual function in mitochondria: it suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex. EMBO J 1991;10:2023-2031.
9422602 Identification and characterization of aarF, a locus required for production of ubiquinone in Providencia stuartii and Escherichia coli and for expression of 2'-N-acetyltransferase in P. stuartii. J Bacteriol 1998;180:128-135.

Pkinase_fungal

Pkinase
1956325 Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members. Methods Enzymol 1991;200:38-62.
7768349 Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification. FASEB J 1995;9:576-596.
9020587 The protein kinases of budding yeast: six score and more. Trends Biochem Sci 1997;22:18-22.

LRR_1
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.
8264799 Crystal structure of porcine ribonuclease inhibitor, a protein with leucine-rich repeats. Nature 1993;366:751-756.

LRRNT_2
7817399 The leucine-rich repeat: a versatile binding motif. Trends Biochem Sci 1994;19:415-421.

LRR_6

LRR_4

APH
2163618 Cloning of aminoglycoside phosphotransferase (APH) gene from antibiotic- producing strain of Bacillus circulans into a high-expression vector, pKK223-3. Purification, properties and location of the enzyme [published erratum appears in Biochem J 1991 Feb 1 Biochem J 1990;268:671-677.
2167474 PCR cloning of a streptomycin phosphotransferase (aphE) gene from Streptomyces griseus ATCC 12475. Nucleic Acids Res 1990;18:4615-4615.

PK_Tyr_Ser-Thr

Domain	Description	Evalue	Bits	GA	Start	End
LRRNT_2	Leucine rich repeat N-terminal domain	2.4E-15	46	20.70	17	55
LRR_8	Leucine rich repeat	1.8E-08	24	27.00	61	120
LRR_4	Leucine Rich repeats (2 copies)	0.042	4	27.00	63	96
LRR_4	Leucine Rich repeats (2 copies)	6.1E-06	16	27.00	85	121
LRR_8	Leucine rich repeat	1.1E-09	28	27.00	85	144
LRR_1	Leucine Rich Repeat	0.31	2	20.60	85	101
LRR_6	Leucine Rich repeat	0.0028	8	23.40	107	123
LRR_4	Leucine Rich repeats (2 copies)	3.4E-08	23	27.00	108	148
LRR_1	Leucine Rich Repeat	0.002	9	20.60	109	128
LRR_4	Leucine Rich repeats (2 copies)	5.3E-07	20	27.00	132	168
LRR_8	Leucine rich repeat	2.2E-10	30	27.00	132	191
LRR_6	Leucine Rich repeat	0.0017	8	23.40	132	147
LRR_1	Leucine Rich Repeat	0.00021	12	20.60	134	155
LRR_1	Leucine Rich Repeat	0.12	3	20.60	157	177
LRR_4	Leucine Rich repeats (2 copies)	1.1E-05	15	27.00	157	193
LRR_6	Leucine Rich repeat	0.063	3	23.40	180	193
LRR_4	Leucine Rich repeats (2 copies)	0.013	6	27.00	182	222
LRR_1	Leucine Rich Repeat	0.0044	8	20.60	182	204
LRR_8	Leucine rich repeat	0.00056	9	27.00	201	241
LRR_1	Leucine Rich Repeat	0.34	2	20.60	206	226
LRR_6	Leucine Rich repeat	0.17	2	23.40	229	241
LRR_8	Leucine rich repeat	3.8E-06	16	27.00	230	289
LRR_1	Leucine Rich Repeat	0.88	1	20.60	231	252
LRR_1	Leucine Rich Repeat	0.18	3	20.60	258	276
LRR_4	Leucine Rich repeats (2 copies)	1.7E-05	15	27.00	258	293
LRR_1	Leucine Rich Repeat	0.066	4	20.60	278	298
LRR_1	Leucine Rich Repeat	0.023	5	20.60	302	320
LRR_4	Leucine Rich repeats (2 copies)	0.008	6	27.00	302	336
LRR_8	Leucine rich repeat	0.0012	8	27.00	302	336
LRR_8	Leucine rich repeat	0.029	4	27.00	324	361
LRR_4	Leucine Rich repeats (2 copies)	0.044	4	27.00	324	364
LRR_6	Leucine Rich repeat	0.7	0	23.40	347	362
LRR_1	Leucine Rich Repeat	0.31	2	20.60	350	369
LRR_8	Leucine rich repeat	2.3E-10	30	27.00	373	431
LRR_1	Leucine Rich Repeat	0.83	1	20.60	374	393
LRR_6	Leucine Rich repeat	0.23	2	23.40	395	410
LRR_4	Leucine Rich repeats (2 copies)	0.0072	6	27.00	397	435
LRR_8	Leucine rich repeat	6.5E-07	19	27.00	444	504
LRR_4	Leucine Rich repeats (2 copies)	0.00022	11	27.00	445	484
LRR_1	Leucine Rich Repeat	0.24	2	20.60	445	467
LRR_4	Leucine Rich repeats (2 copies)	0.00046	10	27.00	494	532
LRR_8	Leucine rich repeat	2.6E-10	30	27.00	517	575
LRR_1	Leucine Rich Repeat	0.012	6	20.60	517	539
LRR_6	Leucine Rich repeat	0.017	5	23.40	517	531
LRR_6	Leucine Rich repeat	0.13	2	23.40	542	550
LRR_1	Leucine Rich Repeat	0.0032	8	20.60	542	563
LRR_4	Leucine Rich repeats (2 copies)	0.00012	12	27.00	542	580
LRR_6	Leucine Rich repeat	0.017	5	23.40	562	577
LRR_1	Leucine Rich Repeat	0.0096	6	20.60	564	583
ABC1	ABC1 family	9.8E-05	12	20.60	669	706
Pkinase	Protein kinase domain	0	143	20.40	678	955
PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	0	129	23.10	679	958
APH	Phosphotransferase enzyme family	0.015	5	22.40	681	785
Pkinase_fungal	Fungal protein kinase	2.5E-05	13	24.10	792	842
APH	Phosphotransferase enzyme family	0.00081	9	22.40	810	838