c2pfam

AT5G61190.1 :

Domain Description Evalue Bits GA Start End
NYN NYN domain 7.1E-30 93 24.20 12 148
TUTase TUTase nucleotidyltransferase domain 0.024 2 25.80 229 270
zf-C2H2_2 C2H2 type zinc-finger (2 copies) 0.0011 8 26.90 241 271
zf-C2H2_9 C2H2 type zinc-finger (1 copy) 0.042 3 29.00 243 266
zf-met Zinc-finger of C2H2 type 0.062 3 21.20 244 252
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 1 -1 22.60 245 263
zf-C2H2_2 C2H2 type zinc-finger (2 copies) 0.0003 10 26.90 293 324
zf-C2H2_9 C2H2 type zinc-finger (1 copy) 0.026 3 29.00 298 324
TUTase TUTase nucleotidyltransferase domain 0.0061 4 25.80 298 333
zf-U1 U1 zinc finger 0.0022 7 20.60 299 324
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 3.2E-07 20 22.60 299 322
zf-met Zinc-finger of C2H2 type 5.1E-10 29 21.20 299 321
TUTase TUTase nucleotidyltransferase domain 0.0013 7 25.80 352 396
zf-C2H2_2 C2H2 type zinc-finger (2 copies) 2.5E-05 14 26.90 358 399
zf-met Zinc-finger of C2H2 type 1.5E-10 30 21.20 368 392
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 5.8E-08 22 22.60 368 392
zf-U1 U1 zinc finger 0.0075 5 20.60 381 396
TUTase TUTase nucleotidyltransferase domain 0.0011 7 25.80 465 504
zf-C2H2_2 C2H2 type zinc-finger (2 copies) 0.002 8 26.90 466 502
zf-U1 U1 zinc finger 0.00068 9 20.60 468 497
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 6.9E-07 19 22.60 468 493
zf-met Zinc-finger of C2H2 type 8.5E-08 22 21.20 469 493
zf-met Zinc-finger of C2H2 type 1.3E-10 31 21.20 701 724
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 2.1E-06 17 22.60 701 725
zf-C2H2_2 C2H2 type zinc-finger (2 copies) 0.0032 7 26.90 701 734
TUTase TUTase nucleotidyltransferase domain 0.025 2 25.80 701 742
zf-C2H2_9 C2H2 type zinc-finger (1 copy) 0.018 4 29.00 702 727
zf-U1 U1 zinc finger 0.024 4 20.60 702 728

995

NYN
TUTase
zf-C2H2_2
zf-C2H2_9
zf-met
zf-C2H2_jaz
zf-C2H2_2
zf-C2H2_9
TUTase
zf-U1
zf-C2H2_jaz
zf-met
TUTase
zf-C2H2_2
zf-met
zf-C2H2_jaz
zf-U1
TUTase
zf-C2H2_2
zf-U1
zf-C2H2_jaz
zf-met
zf-met
zf-C2H2_jaz
zf-C2H2_2
TUTase
zf-C2H2_9
zf-U1

References:

zf-met

NYN

zf-C2H2_2

zf-U1
12486009 The splicing regulator TIA-1 interacts with U1-C to promote U1 snRNP recruitment to 5' splice sites. EMBO J 2002;21:6882-6892.

TUTase

zf-C2H2_9

zf-C2H2_jaz
10488071 JAZ requires the double-stranded RNA-binding zinc finger motifs for nuclear localization. J Biol Chem. 1999;274:27399-27406.

Domain	Description	Evalue	Bits	GA	Start	End
NYN	NYN domain	7.1E-30	93	24.20	12	148
TUTase	TUTase nucleotidyltransferase domain	0.024	2	25.80	229	270
zf-C2H2_2	C2H2 type zinc-finger (2 copies)	0.0011	8	26.90	241	271
zf-C2H2_9	C2H2 type zinc-finger (1 copy)	0.042	3	29.00	243	266
zf-met	Zinc-finger of C2H2 type	0.062	3	21.20	244	252
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	1	-1	22.60	245	263
zf-C2H2_2	C2H2 type zinc-finger (2 copies)	0.0003	10	26.90	293	324
zf-C2H2_9	C2H2 type zinc-finger (1 copy)	0.026	3	29.00	298	324
TUTase	TUTase nucleotidyltransferase domain	0.0061	4	25.80	298	333
zf-U1	U1 zinc finger	0.0022	7	20.60	299	324
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	3.2E-07	20	22.60	299	322
zf-met	Zinc-finger of C2H2 type	5.1E-10	29	21.20	299	321
TUTase	TUTase nucleotidyltransferase domain	0.0013	7	25.80	352	396
zf-C2H2_2	C2H2 type zinc-finger (2 copies)	2.5E-05	14	26.90	358	399
zf-met	Zinc-finger of C2H2 type	1.5E-10	30	21.20	368	392
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	5.8E-08	22	22.60	368	392
zf-U1	U1 zinc finger	0.0075	5	20.60	381	396
TUTase	TUTase nucleotidyltransferase domain	0.0011	7	25.80	465	504
zf-C2H2_2	C2H2 type zinc-finger (2 copies)	0.002	8	26.90	466	502
zf-U1	U1 zinc finger	0.00068	9	20.60	468	497
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	6.9E-07	19	22.60	468	493
zf-met	Zinc-finger of C2H2 type	8.5E-08	22	21.20	469	493
zf-met	Zinc-finger of C2H2 type	1.3E-10	31	21.20	701	724
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	2.1E-06	17	22.60	701	725
zf-C2H2_2	C2H2 type zinc-finger (2 copies)	0.0032	7	26.90	701	734
TUTase	TUTase nucleotidyltransferase domain	0.025	2	25.80	701	742
zf-C2H2_9	C2H2 type zinc-finger (1 copy)	0.018	4	29.00	702	727
zf-U1	U1 zinc finger	0.024	4	20.60	702	728