c2pfam

AT1G28510.1 :

Domain Description Evalue Bits GA Start End
OPA3 Optic atrophy 3 protein (OPA3) 0 149 20.70 3 126
DUF3754 Protein of unknown function (DUF3754) 0.02 5 21.50 5 31
Phage_GPO Phage capsid scaffolding protein (GPO) serine peptidase 0.0011 9 21.10 17 147
DUF4527 Protein of unknown function (DUF4527) 0.43 0 29.00 20 50
DUF1178 Protein of unknown function (DUF1178) 0.00025 11 26.50 25 71
DUF3754 Protein of unknown function (DUF3754) 0.068 3 21.50 36 62
Sec16 Vesicle coat trafficking protein Sec16 mid-region 0.00022 12 23.00 84 130
DUF3754 Protein of unknown function (DUF3754) 0.37 1 21.50 93 115
Ax_dynein_light Axonemal dynein light chain 2.4E-06 18 21.50 94 146
DivIC Septum formation initiator 3E-07 20 24.00 95 147
DUF4527 Protein of unknown function (DUF4527) 0.00014 11 29.00 97 147
DUF1178 Protein of unknown function (DUF1178) 0.12 3 26.50 98 138
zf-CpG_bind_C CpG binding protein zinc finger C terminal domain 5.6E-05 13 21.70 98 145
Rota_NSP3 Rotavirus non-structural protein NSP3 3.8E-06 16 25.00 100 145
PRP1_N PRP1 splicing factor, N-terminal 0.00015 12 20.90 101 141
HOOK HOOK protein 1.2E-06 17 35.00 105 145
B277 Domain of unknown function 0.00033 10 27.00 107 135
M M protein repeat 0.02 6 20.80 107 118
Snapin_Pallidin Snapin/Pallidin 0.00018 12 29.60 113 145
M M protein repeat 0.0068 7 20.80 124 141

171

OPA3
DUF3754
Phage_GPO
DUF4527
DUF1178
DUF3754
Sec16
DUF3754
Ax_dynein_light
DivIC
DUF4527
DUF1178
zf-CpG_bind_C
Rota_NSP3
PRP1_N
HOOK
B277
M
Snapin_Pallidin
M

References:

Phage_GPO
1837355 Nucleotide sequence of the DNA packaging and capsid synthesis genes of bacteriophage P2. Nucleic Acids Res 1991;19:7207-7214.
19064277 Functional domains of the bacteriophage P2 scaffolding protein: Identification of residues involved in assembly and protease activity. 2008; [Epub ahead of print]

Ax_dynein_light
8662724 Purification, cloning, and sequence analysis of a Mr = 30,000 protein from sea urchin axonemes that is important for sperm motility. Relationship of the protein to a dynein light chain. J Biol Chem. 1996;271:12807-12813.
11606062 Association between actin and light chains in Chlamydomonas flagellar inner-arm dyneins. Biochem Biophys Res Commun. 2001;288:443-447.

DivIC
8113187 Characterization of a cell division gene from Bacillus subtilis that is required for vegetative and sporulation septum formation. J Bacteriol 1994;176:1451-1459.

PRP1_N
9003295 Isolation of novel pre-mRNA splicing mutants of Schizosaccharomyces pombe. Mol Gen Genet 1996;253:118-127.

Snapin_Pallidin

OPA3
12126933 3-Methylglutaconic aciduria type III in a non-Iraqi-Jewish kindred: clinical and molecular findings. Mol Genet Metab 2002;76:201-206.

B277

HOOK
11238449 The Golgi-associated hook3 protein is a member of a novel family of microtubule-binding proteins. J Cell Biol 2001;152:923-934.
12075009 The Hook1 gene is non-functional in the abnormal spermatozoon head shape (azh) mutant mouse. Hum Mol Genet 2002;11:1647-1658.

zf-CpG_bind_C
11572867 Identification and characterization of the DNA binding domain of CpG-binding protein. J Biol Chem. 2001;276:44669-44676.

M
8830235 M-related protein (Mrp) contributes to group A streptococcal resistance to phagocytosis by human granulocytes. Mol Microbiol 1996;19:429-441.

DUF1178

Rota_NSP3
7871749 Comparative nucleotide and amino acid sequence analysis of the sequence- specific RNA-binding rotavirus nonstructural protein NSP3. Virology 1995;207:327-333.
1326821 Characterization of an oligomerization domain and RNA-binding properties on rotavirus nonstructural protein NS34. Virology 1992;190:68-83.
9755181 Rotavirus RNA-binding protein NSP3 interacts with eIF4GI and evicts the poly(A) binding protein from eIF4F. EMBO J 1998;17:5811-5821.

DUF3754

DUF4527

Sec16

Domain	Description	Evalue	Bits	GA	Start	End
OPA3	Optic atrophy 3 protein (OPA3)	0	149	20.70	3	126
DUF3754	Protein of unknown function (DUF3754)	0.02	5	21.50	5	31
Phage_GPO	Phage capsid scaffolding protein (GPO) serine peptidase	0.0011	9	21.10	17	147
DUF4527	Protein of unknown function (DUF4527)	0.43	0	29.00	20	50
DUF1178	Protein of unknown function (DUF1178)	0.00025	11	26.50	25	71
DUF3754	Protein of unknown function (DUF3754)	0.068	3	21.50	36	62
Sec16	Vesicle coat trafficking protein Sec16 mid-region	0.00022	12	23.00	84	130
DUF3754	Protein of unknown function (DUF3754)	0.37	1	21.50	93	115
Ax_dynein_light	Axonemal dynein light chain	2.4E-06	18	21.50	94	146
DivIC	Septum formation initiator	3E-07	20	24.00	95	147
DUF4527	Protein of unknown function (DUF4527)	0.00014	11	29.00	97	147
DUF1178	Protein of unknown function (DUF1178)	0.12	3	26.50	98	138
zf-CpG_bind_C	CpG binding protein zinc finger C terminal domain	5.6E-05	13	21.70	98	145
Rota_NSP3	Rotavirus non-structural protein NSP3	3.8E-06	16	25.00	100	145
PRP1_N	PRP1 splicing factor, N-terminal	0.00015	12	20.90	101	141
HOOK	HOOK protein	1.2E-06	17	35.00	105	145
B277	Domain of unknown function	0.00033	10	27.00	107	135
M	M protein repeat	0.02	6	20.80	107	118
Snapin_Pallidin	Snapin/Pallidin	0.00018	12	29.60	113	145
M	M protein repeat	0.0068	7	20.80	124	141