AT5G61990.1 :

DomainDescriptionEvalueBitsGAStartEnd
DEDDeath effector domain0.13322.0089123
PPR_longPentacotripeptide-repeat region of PRORP0.26127.0090126
PPR_2PPR repeat family 0.25230.00107128
PPR_1PPR repeat0.11323.80107123
PPRPPR repeat0.0011025.00107127
ATP13Mitochondrial ATPase expression0.36126.70108144
TPR_14Tetratricopeptide repeat0.15423.50109134
PPRPPR repeat0.0047825.00152175
PPR_2PPR repeat family 0.1430.00152175
PPR_2PPR repeat family 2E-072230.00191233
PPRPPR repeat0.082425.00191217
PPR_longPentacotripeptide-repeat region of PRORP0.58027.00207237
PPR_3Pentatricopeptide repeat domain0.00111025.00210248
PPR_1PPR repeat0.000171223.80216237
PPRPPR repeat0.0045825.00223245
PPR_2PPR repeat family 1.5E-072230.00257289
PPR_longPentacotripeptide-repeat region of PRORP1.2E-072227.00257400
PPR_3Pentatricopeptide repeat domain0.057425.00266319
PPR_1PPR repeat1.2E-092923.80271303
PPRPPR repeat5.4E-082425.00278308
PPR_2PPR repeat family 3.9E-134030.00279324
MRP-S27Mitochondrial 28S ribosomal protein S277.4E-051225.90279340
SPOB_aSensor_kinase_SpoOB-type, alpha-helical domain0.48128.10283301
Mtf2Mtf2 family0.059427.00293318
PPR_3Pentatricopeptide repeat domain0.000661025.00298343
AEP1ATPase expression protein 10.14227.00306343
PPR_1PPR repeat6.2E-051323.80307339
PPRPPR repeat2.1E-061925.00314343
PPR_2PPR repeat family 0.0064730.00318344
PPR_3Pentatricopeptide repeat domain0.0025925.00334392
AEP1ATPase expression protein 10.023427.00344397
PPRPPR repeat0.000251225.00349378
PPR_2PPR repeat family 0.00081030.00349381
PPR_1PPR repeat0.14323.80359373
DUF3368Domain of unknown function (DUF3368)0.65127.30359377
PPR_3Pentatricopeptide repeat domain0.000531125.00369413
PPR_1PPR repeat2.1E-072123.80378409
PPR_2PPR repeat family 3.3E-144430.00384429
PPRPPR repeat4.2E-072125.00385413
PPR_longPentacotripeptide-repeat region of PRORP1.4E-113527.00389506
RPM2Mitochondrial ribonuclease P subunit (RPM2)0.22326.10389466
MRP-S27Mitochondrial 28S ribosomal protein S270.000251125.90397515
PPR_3Pentatricopeptide repeat domain3.6E-113425.00404462
BKACEbeta-keto acid cleavage enzyme0.0017824.80411492
PPR_1PPR repeat8.7E-092623.80415443
PPRPPR repeat1.6E-072225.00418448
PPR_2PPR repeat family 1.7E-051630.00422453
TPR_19Tetratricopeptide repeat0.022625.00430480
ClathrinRegion in Clathrin and VPS0.11323.60431477
PPR_3Pentatricopeptide repeat domain3.6E-154725.00439494
ATP13Mitochondrial ATPase expression0.11326.70442478
PPR_1PPR repeat6E-102923.80447479
HTH_56Cch helix turn helix domain0.002926.20449483
PPR_2PPR repeat family 1.1E-154830.00450499
PPRPPR repeat1.5E-072225.00453483
TPR_14Tetratricopeptide repeat0.64223.50455478
RPM2Mitochondrial ribonuclease P subunit (RPM2)0.34226.10459529
Exog_CEndo/exonuclease (EXOG) C-terminal domain0.014629.50473486
ECSITEvolutionarily conserved signalling intermediate in Toll pathway0.011521.90474495
PPR_1PPR repeat1.9E-092823.80482514
PPR_2PPR repeat family 2E-144430.00485532
PPRPPR repeat2.6E-092825.00489518
ClathrinRegion in Clathrin and VPS0.19223.60493547
SPOB_aSensor_kinase_SpoOB-type, alpha-helical domain0.3228.10493516
PPR_longPentacotripeptide-repeat region of PRORP0.000121227.00498572
PPR_3Pentatricopeptide repeat domain6.2E-072025.00510558
PPR_1PPR repeat6.3E-051323.80516532
PPR_2PPR repeat family 3E-051530.00523557
PPRPPR repeat2.1E-051525.00523553
MRP-S27Mitochondrial 28S ribosomal protein S270.077225.90524590
SPOB_aSensor_kinase_SpoOB-type, alpha-helical domain0.09328.10529549
ECSITEvolutionarily conserved signalling intermediate in Toll pathway0.52021.90546574
PPR_1PPR repeat1.1E-051623.80552583
PPR_2PPR repeat family 2.9E-134130.00555604
PPRPPR repeat1.3E-061925.00559588
RPM2Mitochondrial ribonuclease P subunit (RPM2)0.17326.10570605
PPR_longPentacotripeptide-repeat region of PRORP8.7E-102927.00570669
PPR_3Pentatricopeptide repeat domain5.7E-123625.00581637
PPR_1PPR repeat6.9E-102923.80587619
Mad3_BUB1_I_2Putative Mad3/BUB1 like region 1 protein0.00121037.60587688
PPR_2PPR repeat family 9E-164930.00592639
MRP-S27Mitochondrial 28S ribosomal protein S270.000481025.90593656
PPRPPR repeat9.7E-113225.00594623
Exog_CEndo/exonuclease (EXOG) C-terminal domain0.7129.50612626
PPR_1PPR repeat1.2E-103223.80621654
PPR_2PPR repeat family 3.4E-113430.00625662
PPR_3Pentatricopeptide repeat domain3.1E-113425.00626671
PPRPPR repeat1.6E-103225.00628658
SPOB_aSensor_kinase_SpoOB-type, alpha-helical domain0.027528.10633656
RPM2Mitochondrial ribonuclease P subunit (RPM2)0.52126.10643672
BKACEbeta-keto acid cleavage enzyme0.26124.80647676
PPR_longPentacotripeptide-repeat region of PRORP1.9E-072127.00649731
PPR_1PPR repeat7.4E-154523.80657689
PPR_2PPR repeat family 3.9E-206330.00660709
AEP1ATPase expression protein 10.032427.00663696
PPRPPR repeat6.4E-103025.00664693
SPOB_aSensor_kinase_SpoOB-type, alpha-helical domain0.62128.10671689
TPR_19Tetratricopeptide repeat0.41225.00674687
DUF3368Domain of unknown function (DUF3368)0.0045827.30674692
MRP-S27Mitochondrial 28S ribosomal protein S270.0011825.90675726
Mtf2Mtf2 family0.029527.00676699
PPR_3Pentatricopeptide repeat domain2.6E-103125.00684730
PPR_1PPR repeat5.6E-195823.80691724
ATP13Mitochondrial ATPase expression0.035526.70692723
AEP1ATPase expression protein 10.89-127.00698731
PPR_2PPR repeat family 5.4E-206230.00698744
PPRPPR repeat1.1E-123825.00698728
MA3MA3 domain0.0014920.70702740
TPR_19Tetratricopeptide repeat0.99125.00710752
Mtf2Mtf2 family0.67027.00711732
COX5ACytochrome c oxidase subunit Va0.000281221.30712775
PPR_3Pentatricopeptide repeat domain1.4E-072225.00718775
PPR_1PPR repeat1.7E-103123.80726755
ATP13Mitochondrial ATPase expression0.82026.70728754
PPRPPR repeat5.8E-061725.00734755
PPR_longPentacotripeptide-repeat region of PRORP4.5E-123627.00737900
PPR_2PPR repeat family 0.59130.00769783
AEP1ATPase expression protein 10.011527.00783847
MRP-S27Mitochondrial 28S ribosomal protein S275.1E-061625.90784947
PPR_1PPR repeat5.7E-144223.80802832
PPR_3Pentatricopeptide repeat domain4E-092725.00802850
PPR_2PPR repeat family 3.1E-196030.00803850
PPRPPR repeat9.8E-113225.00806835
ClathrinRegion in Clathrin and VPS0.42123.60809852
DEDDeath effector domain0.067422.00814844
TPR_19Tetratricopeptide repeat0.4225.00815832
DUF3368Domain of unknown function (DUF3368)0.42127.30817835
RPM2Mitochondrial ribonuclease P subunit (RPM2)0.13326.10821889
PPR_3Pentatricopeptide repeat domain5.8E-113325.00827885
PPR_1PPR repeat1.5E-051523.80835855
PPR_2PPR repeat family 3.1E-092830.00838886
PPRPPR repeat0.082425.00841855
PPR_longPentacotripeptide-repeat region of PRORP0.000591027.00858948
PPR_3Pentatricopeptide repeat domain0.000871025.00862901
Exog_CEndo/exonuclease (EXOG) C-terminal domain0.96029.50868877
ECSITEvolutionarily conserved signalling intermediate in Toll pathway0.48021.90870894
PPR_1PPR repeat1.1E-072223.80870901
ATP13Mitochondrial ATPase expression0.17226.70872904
PPR_2PPR repeat family 2.1E-051530.00873904
PPRPPR repeat1.3E-051625.00876902
PPR_3Pentatricopeptide repeat domain6.3E-072025.00904941
PPR_1PPR repeat0.000251123.80910942
AEP1ATPase expression protein 10.059327.00912965
PPR_2PPR repeat family 2.3E-072230.00915960
PPRPPR repeat2.7E-051525.00917944
SPOB_aSensor_kinase_SpoOB-type, alpha-helical domain0.06428.10921942

 974

DED
PPR_long
PPR_2
PPR_1
PPR
ATP13
TPR_14
PPR
PPR_2
PPR_2
PPR
PPR_long
PPR_3
PPR_1
PPR
PPR_2
PPR_long
PPR_3
PPR_1
PPR
PPR_2
MRP-S27
SPOB_a
Mtf2
PPR_3
AEP1
PPR_1
PPR
PPR_2
PPR_3
AEP1
PPR
PPR_2
PPR_1
DUF3368
PPR_3
PPR_1
PPR_2
PPR
PPR_long
RPM2
MRP-S27
PPR_3
BKACE
PPR_1
PPR
PPR_2
TPR_19
Clathrin
PPR_3
ATP13
PPR_1
HTH_56
PPR_2
PPR
TPR_14
RPM2
Exog_C
ECSIT
PPR_1
PPR_2
PPR
Clathrin
SPOB_a
PPR_long
PPR_3
PPR_1
PPR_2
PPR
MRP-S27
SPOB_a
ECSIT
PPR_1
PPR_2
PPR
RPM2
PPR_long
PPR_3
PPR_1
Mad3_BUB1_I_2
PPR_2
MRP-S27
PPR
Exog_C
PPR_1
PPR_2
PPR_3
PPR
SPOB_a
RPM2
BKACE
PPR_long
PPR_1
PPR_2
AEP1
PPR
SPOB_a
TPR_19
DUF3368
MRP-S27
Mtf2
PPR_3
PPR_1
ATP13
AEP1
PPR_2
PPR
MA3
TPR_19
Mtf2
COX5A
PPR_3
PPR_1
ATP13
PPR
PPR_long
PPR_2
AEP1
MRP-S27
PPR_1
PPR_3
PPR_2
PPR
Clathrin
DED
TPR_19
DUF3368
RPM2
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR_3
Exog_C
ECSIT
PPR_1
ATP13
PPR_2
PPR
PPR_3
PPR_1
AEP1
PPR_2
PPR
SPOB_a


References:

AEP1

Exog_C

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

TPR_14

ECSIT
10465784 ECSIT is an evolutionarily conserved intermediate in the Toll/IL-1 signal transduction pathway. Genes Dev 1999;13:2059-2071.

TPR_19

MRP-S27
11344316 Identification of four proteins from the small subunit of the mammalian mitochondrial ribosome using a proteomics approach. Protein Sci. 2001;10:471-481.

PPR_long

PPR_3

PPR_2

PPR_1

RPM2
1409716 A 105-kDa protein is required for yeast mitochondrial RNase P activity. Proc Natl Acad Sci U S A. 1992;89:9875-9879.
16024791 Rpm2p, a component of yeast mitochondrial RNase P, acts as a transcriptional activator in the nucleus. Mol Cell Biol. 2005;25:6546-6558.

Mad3_BUB1_I_2

BKACE

HTH_56

ATP13

Mtf2

MA3
10973054 Novel eIF4G domain homologues linking mRNA translation with nonsense-mediated mRNA decay. Trends Biochem Sci 2000;25:423-426.

DED
9582077 NMR structure and mutagenesis of the FADD (Mort1) death-effector domain. Nature 1998;392:941-945.

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

SPOB_a

DUF3368

COX5A
8638158 The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 A. Science 1996;272:1136-1144.