c2pfam

AT5G62410.1 :

Domain Description Evalue Bits GA Start End
SMC_N RecF/RecN/SMC N terminal domain 0 231 40.00 2 1161
AAA_23 AAA domain 5.2E-16 50 27.00 8 282
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 1.8E-07 21 27.00 27 69
AAA_13 AAA domain 0.24 0 36.00 27 40
AAA_29 P-loop containing region of AAA domain 1.4E-06 18 27.00 28 49
ABC_tran ABC transporter 0.00085 10 23.10 29 48
Taxilin Myosin-like coiled-coil protein 0.55 -1 26.00 177 210
Spc7 Spc7 kinetochore protein 0.036 3 34.00 181 318
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.12 2 27.00 187 282
BST2 Bone marrow stromal antigen 2 0.64 1 27.00 188 217
BST2 Bone marrow stromal antigen 2 0.0099 6 27.00 253 287
ABC_tran ABC transporter 0.21 2 23.10 256 336
Taxilin Myosin-like coiled-coil protein 2.3E-08 23 26.00 256 460
AAA_13 AAA domain 7.1E-07 18 36.00 257 484
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.0016 8 38.00 261 332
PspA_IM30 PspA/IM30 family 2.9E-07 20 30.00 267 446
Spc7 Spc7 kinetochore protein 0.001 8 34.00 298 379
BST2 Bone marrow stromal antigen 2 0.0057 7 27.00 315 379
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.27 1 38.00 331 375
BST2 Bone marrow stromal antigen 2 0.088 3 27.00 382 463
Spc7 Spc7 kinetochore protein 6.2E-06 15 34.00 396 538
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.076 3 38.00 411 445
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.34 1 38.00 429 503
PspA_IM30 PspA/IM30 family 0.24 1 30.00 459 504
SMC_hinge SMC proteins Flexible Hinge Domain 1.8E-24 76 21.60 518 638
bPH_2 Bacterial PH domain 0.00016 12 20.50 562 590
BST2 Bone marrow stromal antigen 2 0.87 0 27.00 679 713
Spc7 Spc7 kinetochore protein 0.013 4 34.00 681 802
AAA_13 AAA domain 0.019 3 36.00 687 867
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.23 1 38.00 690 724
BST2 Bone marrow stromal antigen 2 1.5E-06 19 27.00 739 811
Spc7 Spc7 kinetochore protein 0.0052 5 34.00 788 926
Baculo_PEP_C Baculovirus polyhedron envelope protein, PEP, C terminus 0.00049 10 38.00 789 852
BST2 Bone marrow stromal antigen 2 0.57 1 27.00 824 860
Taxilin Myosin-like coiled-coil protein 2.9E-05 13 26.00 843 913
PspA_IM30 PspA/IM30 family 0.0021 7 30.00 899 1017
Taxilin Myosin-like coiled-coil protein 0.04 3 26.00 963 1028
Spc7 Spc7 kinetochore protein 0.054 2 34.00 963 1030
AAA_13 AAA domain 0.055 2 36.00 969 1026
ABC_tran ABC transporter 1E-05 16 23.10 1008 1113
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 2.5E-07 21 27.00 1077 1142

1175

SMC_N
AAA_23
AAA_21
AAA_13
AAA_29
ABC_tran
Taxilin
Spc7
AAA_21
BST2
BST2
ABC_tran
Taxilin
AAA_13
Baculo_PEP_C
PspA_IM30
Spc7
BST2
Baculo_PEP_C
BST2
Spc7
Baculo_PEP_C
Baculo_PEP_C
PspA_IM30
SMC_hinge
bPH_2
BST2
Spc7
AAA_13
Baculo_PEP_C
BST2
Spc7
Baculo_PEP_C
BST2
Taxilin
PspA_IM30
Taxilin
Spc7
AAA_13
ABC_tran
AAA_21

References:

BST2

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

PspA_IM30
10629175 The PspA protein of Escherichia coli is a negative regulator of sigma(54)-dependent transcription. J Bacteriol 2000;182:311-319.
12079332 Mechanism of Action of the Escherichia coli Phage Shock Protein PspA in Repression of the AAA Family Transcription Factor PspF. J Mol Biol 2002;320:23-37.

Baculo_PEP_C
8176372 Orgyia pseudotsugata baculovirus p10 and polyhedron envelope protein genes: analysis of their relative expression levels and role in polyhedron structure. J Gen Virol 1994;75:1115-1123.

Taxilin
12558796 Taxilin; a novel syntaxin-binding protein that is involved in Ca2+-dependent exocytosis in neuroendocrine cells. Genes Cells. 2003;8:17-28.
16831913 Inhibition of ATF4 transcriptional activity by FIAT/gamma-taxilin modulates bone mass accrual. Ann N Y Acad Sci. 2006;1068:131-142.

bPH_2

AAA_29

AAA_13

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

AAA_23

SMC_hinge
12411491 Hinge-mediated dimerization of SMC protein is essential for its dynamic interaction with DNA. EMBO J 2002;21:5733-5744.

AAA_21

Spc7
15371542 The fission yeast kinetochore component Spc7 associates with the EB1 family member Mal3 and is required for kinetochore-spindle association. Mol Biol Cell 2004;15:5255-5267.

Domain	Description	Evalue	Bits	GA	Start	End
SMC_N	RecF/RecN/SMC N terminal domain	0	231	40.00	2	1161
AAA_23	AAA domain	5.2E-16	50	27.00	8	282
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	1.8E-07	21	27.00	27	69
AAA_13	AAA domain	0.24	0	36.00	27	40
AAA_29	P-loop containing region of AAA domain	1.4E-06	18	27.00	28	49
ABC_tran	ABC transporter	0.00085	10	23.10	29	48
Taxilin	Myosin-like coiled-coil protein	0.55	-1	26.00	177	210
Spc7	Spc7 kinetochore protein	0.036	3	34.00	181	318
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.12	2	27.00	187	282
BST2	Bone marrow stromal antigen 2	0.64	1	27.00	188	217
BST2	Bone marrow stromal antigen 2	0.0099	6	27.00	253	287
ABC_tran	ABC transporter	0.21	2	23.10	256	336
Taxilin	Myosin-like coiled-coil protein	2.3E-08	23	26.00	256	460
AAA_13	AAA domain	7.1E-07	18	36.00	257	484
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.0016	8	38.00	261	332
PspA_IM30	PspA/IM30 family	2.9E-07	20	30.00	267	446
Spc7	Spc7 kinetochore protein	0.001	8	34.00	298	379
BST2	Bone marrow stromal antigen 2	0.0057	7	27.00	315	379
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.27	1	38.00	331	375
BST2	Bone marrow stromal antigen 2	0.088	3	27.00	382	463
Spc7	Spc7 kinetochore protein	6.2E-06	15	34.00	396	538
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.076	3	38.00	411	445
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.34	1	38.00	429	503
PspA_IM30	PspA/IM30 family	0.24	1	30.00	459	504
SMC_hinge	SMC proteins Flexible Hinge Domain	1.8E-24	76	21.60	518	638
bPH_2	Bacterial PH domain	0.00016	12	20.50	562	590
BST2	Bone marrow stromal antigen 2	0.87	0	27.00	679	713
Spc7	Spc7 kinetochore protein	0.013	4	34.00	681	802
AAA_13	AAA domain	0.019	3	36.00	687	867
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.23	1	38.00	690	724
BST2	Bone marrow stromal antigen 2	1.5E-06	19	27.00	739	811
Spc7	Spc7 kinetochore protein	0.0052	5	34.00	788	926
Baculo_PEP_C	Baculovirus polyhedron envelope protein, PEP, C terminus	0.00049	10	38.00	789	852
BST2	Bone marrow stromal antigen 2	0.57	1	27.00	824	860
Taxilin	Myosin-like coiled-coil protein	2.9E-05	13	26.00	843	913
PspA_IM30	PspA/IM30 family	0.0021	7	30.00	899	1017
Taxilin	Myosin-like coiled-coil protein	0.04	3	26.00	963	1028
Spc7	Spc7 kinetochore protein	0.054	2	34.00	963	1030
AAA_13	AAA domain	0.055	2	36.00	969	1026
ABC_tran	ABC transporter	1E-05	16	23.10	1008	1113
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	2.5E-07	21	27.00	1077	1142