c2pfam

AT1G28690.1 :

Domain Description Evalue Bits GA Start End
AEP1 ATPase expression protein 1 0.18 0 27.00 54 112
PPR_3 Pentatricopeptide repeat domain 0.00015 11 25.00 56 110
PPR PPR repeat 0.097 3 25.00 79 95
PPR_1 PPR repeat 0.00071 9 23.80 97 118
PPR_long Pentacotripeptide-repeat region of PRORP 0.76 -2 27.00 97 153
PPR_2 PPR repeat family 2.5E-09 27 30.00 99 144
PPR PPR repeat 2.8E-07 20 25.00 102 130
PPR_long Pentacotripeptide-repeat region of PRORP 0.053 2 27.00 161 204
AEP1 ATPase expression protein 1 1.8E-06 16 27.00 168 218
PPR_3 Pentatricopeptide repeat domain 4.3E-05 13 25.00 170 205
PPR_2 PPR repeat family 1E-05 15 30.00 176 206
PPR PPR repeat 2.1E-06 17 25.00 179 206
PPR_1 PPR repeat 0.0011 8 23.80 179 202
TPR_19 Tetratricopeptide repeat 0.012 6 25.00 179 204
TPR_7 Tetratricopeptide repeat 0.035 4 27.90 179 200
TPR_2 Tetratricopeptide repeat 0.2 2 22.40 184 199
PPR_1 PPR repeat 0.00027 10 23.80 205 230
PPR_3 Pentatricopeptide repeat domain 4.3E-05 13 25.00 205 235
PPR_2 PPR repeat family 5.1E-07 19 30.00 205 230
PPR PPR repeat 1.9E-07 21 25.00 207 230
PPR_2 PPR repeat family 2.9E-11 33 30.00 235 283
PPR_3 Pentatricopeptide repeat domain 2.8E-05 14 25.00 236 283
PPR_1 PPR repeat 0.0014 8 23.80 236 252
PPR PPR repeat 0.00091 9 25.00 238 253
PPR_long Pentacotripeptide-repeat region of PRORP 2.1E-06 16 27.00 252 339
PPR_1 PPR repeat 0.094 2 23.80 268 281
PPR_3 Pentatricopeptide repeat domain 0.0017 8 25.00 303 339
PPR_1 PPR repeat 5.6E-05 12 23.80 312 335
PPR PPR repeat 9E-07 18 25.00 312 339
AEP1 ATPase expression protein 1 0.0034 6 27.00 312 349
PPR_2 PPR repeat family 1.1E-05 15 30.00 313 339
TPR_19 Tetratricopeptide repeat 0.59 0 25.00 316 338
PPR_long Pentacotripeptide-repeat region of PRORP 1.3E-08 24 27.00 324 432
PPR_2 PPR repeat family 6E-15 45 30.00 337 384
PPR_1 PPR repeat 2.3E-10 29 23.80 338 366
PPR_3 Pentatricopeptide repeat domain 4.1E-10 29 25.00 338 384
PPR PPR repeat 2.2E-14 42 25.00 340 369
TPR_2 Tetratricopeptide repeat 0.0053 7 22.40 349 364
TPR_7 Tetratricopeptide repeat 0.02 5 27.90 350 369
TPR_19 Tetratricopeptide repeat 0.049 4 25.00 352 376
PPR_1 PPR repeat 0.019 4 23.80 371 400
PPR PPR repeat 1E-05 15 25.00 376 403
PPR_2 PPR repeat family 0.0077 6 30.00 381 402
PPR_3 Pentatricopeptide repeat domain 0.17 1 25.00 396 438
PPR_1 PPR repeat 9.5E-05 12 23.80 408 436
PPR_2 PPR repeat family 0.027 4 30.00 413 439
PPR PPR repeat 0.012 6 25.00 413 438
PPR PPR repeat 0.4 1 25.00 445 461
PPR PPR repeat 0.0025 8 25.00 480 508
PPR_3 Pentatricopeptide repeat domain 0.049 3 25.00 480 510
PPR_2 PPR repeat family 0.22 1 30.00 485 508

520

AEP1
PPR_3
PPR
PPR_1
PPR_long
PPR_2
PPR
PPR_long
AEP1
PPR_3
PPR_2
PPR
PPR_1
TPR_19
TPR_7
TPR_2
PPR_1
PPR_3
PPR_2
PPR
PPR_2
PPR_3
PPR_1
PPR
PPR_long
PPR_1
PPR_3
PPR_1
PPR
AEP1
PPR_2
TPR_19
PPR_long
PPR_2
PPR_1
PPR_3
PPR
TPR_2
TPR_7
TPR_19
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
PPR
PPR
PPR_3
PPR_2

References:

TPR_7

AEP1

TPR_19

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
AEP1	ATPase expression protein 1	0.18	0	27.00	54	112
PPR_3	Pentatricopeptide repeat domain	0.00015	11	25.00	56	110
PPR	PPR repeat	0.097	3	25.00	79	95
PPR_1	PPR repeat	0.00071	9	23.80	97	118
PPR_long	Pentacotripeptide-repeat region of PRORP	0.76	-2	27.00	97	153
PPR_2	PPR repeat family	2.5E-09	27	30.00	99	144
PPR	PPR repeat	2.8E-07	20	25.00	102	130
PPR_long	Pentacotripeptide-repeat region of PRORP	0.053	2	27.00	161	204
AEP1	ATPase expression protein 1	1.8E-06	16	27.00	168	218
PPR_3	Pentatricopeptide repeat domain	4.3E-05	13	25.00	170	205
PPR_2	PPR repeat family	1E-05	15	30.00	176	206
PPR	PPR repeat	2.1E-06	17	25.00	179	206
PPR_1	PPR repeat	0.0011	8	23.80	179	202
TPR_19	Tetratricopeptide repeat	0.012	6	25.00	179	204
TPR_7	Tetratricopeptide repeat	0.035	4	27.90	179	200
TPR_2	Tetratricopeptide repeat	0.2	2	22.40	184	199
PPR_1	PPR repeat	0.00027	10	23.80	205	230
PPR_3	Pentatricopeptide repeat domain	4.3E-05	13	25.00	205	235
PPR_2	PPR repeat family	5.1E-07	19	30.00	205	230
PPR	PPR repeat	1.9E-07	21	25.00	207	230
PPR_2	PPR repeat family	2.9E-11	33	30.00	235	283
PPR_3	Pentatricopeptide repeat domain	2.8E-05	14	25.00	236	283
PPR_1	PPR repeat	0.0014	8	23.80	236	252
PPR	PPR repeat	0.00091	9	25.00	238	253
PPR_long	Pentacotripeptide-repeat region of PRORP	2.1E-06	16	27.00	252	339
PPR_1	PPR repeat	0.094	2	23.80	268	281
PPR_3	Pentatricopeptide repeat domain	0.0017	8	25.00	303	339
PPR_1	PPR repeat	5.6E-05	12	23.80	312	335
PPR	PPR repeat	9E-07	18	25.00	312	339
AEP1	ATPase expression protein 1	0.0034	6	27.00	312	349
PPR_2	PPR repeat family	1.1E-05	15	30.00	313	339
TPR_19	Tetratricopeptide repeat	0.59	0	25.00	316	338
PPR_long	Pentacotripeptide-repeat region of PRORP	1.3E-08	24	27.00	324	432
PPR_2	PPR repeat family	6E-15	45	30.00	337	384
PPR_1	PPR repeat	2.3E-10	29	23.80	338	366
PPR_3	Pentatricopeptide repeat domain	4.1E-10	29	25.00	338	384
PPR	PPR repeat	2.2E-14	42	25.00	340	369
TPR_2	Tetratricopeptide repeat	0.0053	7	22.40	349	364
TPR_7	Tetratricopeptide repeat	0.02	5	27.90	350	369
TPR_19	Tetratricopeptide repeat	0.049	4	25.00	352	376
PPR_1	PPR repeat	0.019	4	23.80	371	400
PPR	PPR repeat	1E-05	15	25.00	376	403
PPR_2	PPR repeat family	0.0077	6	30.00	381	402
PPR_3	Pentatricopeptide repeat domain	0.17	1	25.00	396	438
PPR_1	PPR repeat	9.5E-05	12	23.80	408	436
PPR_2	PPR repeat family	0.027	4	30.00	413	439
PPR	PPR repeat	0.012	6	25.00	413	438
PPR	PPR repeat	0.4	1	25.00	445	461
PPR	PPR repeat	0.0025	8	25.00	480	508
PPR_3	Pentatricopeptide repeat domain	0.049	3	25.00	480	510
PPR_2	PPR repeat family	0.22	1	30.00	485	508