c2pfam

AT5G64580.1 :

Domain Description Evalue Bits GA Start End
AAA_11 AAA domain 0.7 0 27.00 76 113
FtsH_ext FtsH Extracellular 0.00018 12 25.50 144 196
RuvB_N Holliday junction DNA helicase ruvB N-terminus 7.7E-09 26 20.00 314 419
ATPase KaiC 0.0001 12 26.60 338 367
TsaE Threonylcarbamoyl adenosine biosynthesis protein TsaE 0.00045 11 26.60 344 374
TIP49 TIP49 C-terminus 1.1E-06 19 23.80 345 385
Sigma54_activat Sigma-54 interaction domain 0.00036 11 20.20 348 371
AAA_16 AAA ATPase domain 1E-06 20 32.60 349 400
IstB_IS21 IstB-like ATP binding protein 5E-05 13 24.10 350 373
AAA_5 AAA domain (dynein-related subfamily) 1.1E-05 16 20.80 351 386
AAA_22 AAA domain 9.9E-05 13 27.00 352 372
AAA_2 AAA domain (Cdc48 subfamily) 4E-07 21 20.60 352 465
AAA ATPase family associated with various cellular activities (AAA) 0 136 20.80 352 486
Mg_chelatase Magnesium chelatase, subunit ChlI 5E-05 13 20.30 352 370
AAA_33 AAA domain 0.00013 13 27.00 352 374
RNA_helicase RNA helicase 0.00045 11 21.50 352 372
AAA_28 AAA domain 0.00015 13 27.00 352 387
AAA_18 AAA domain 0.0004 11 29.40 352 382
AAA_11 AAA domain 0.00053 10 27.00 352 369
AAA_17 AAA domain 0.0022 9 27.00 356 380
AAA_22 AAA domain 0.56 1 27.00 404 463
AAA_lid_3 AAA+ lid domain 8.1E-12 35 27.20 516 556
Peptidase_M41 Peptidase family M41 2.3E-05 15 20.60 578 750
Peptidase_M41 Peptidase family M41 0.43 1 20.60 804 849
AAA_17 AAA domain 0.74 1 27.00 827 854

855

AAA_11
FtsH_ext
RuvB_N
ATPase
TsaE
TIP49
Sigma54_activat
AAA_16
IstB_IS21
AAA_5
AAA_22
AAA_2
AAA
Mg_chelatase
AAA_33
RNA_helicase
AAA_28
AAA_18
AAA_11
AAA_17
AAA_22
AAA_lid_3
Peptidase_M41
Peptidase_M41
AAA_17

References:

IstB_IS21

AAA_16

AAA_11

TsaE

AAA_lid_3

Peptidase_M41

FtsH_ext
12667449 Lack of a robust unfoldase activity confers a unique level of substrate specificity to the universal AAA protease FtsH. Mol Cell 2003;11:659-669.
12732516 The ftsH gene of the wine bacterium Oenococcus oeni is involved in protection against environmental stress. Appl Environ Microbiol 2003;69:2512-2520.

RuvB_N
12423347 The RuvABC resolvasome. Eur J Biochem 2002;269:5492-5501.

Sigma54_activat
11544185 Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes Dev 2001;15:2282-2294.
12618438 Domain Architectures of sigma(54)-Dependent Transcriptional Activators. J Bacteriol 2003;185:1757-1767.

Mg_chelatase
9359397 Mechanism and regulation of Mg-chelatase. Biochem J 1997;327:321-333.
9457877 Reconstitution of an active magnesium chelatase enzyme complex from the bchI, -D, and -H gene products of the green sulfur bacterium Chlorobium vibrioforme expressed in Escherichia coli. J Bacteriol 1998;180:699-704.

AAA_17

AAA_33

ATPase

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_28

AAA_2
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

RNA_helicase
2546125 Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes. Nucleic Acids Res 1989;17:4713-4730.

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

AAA_22

TIP49
12464178 Reptin and pontin antagonistically regulate heart growth in zebrafish embryos. Cell 2002;111:661-672.
10902922 Chromosome mapping and expression of human tip49 family genes. DNA Seq 2000;11:145-148.

AAA_18

Domain	Description	Evalue	Bits	GA	Start	End
AAA_11	AAA domain	0.7	0	27.00	76	113
FtsH_ext	FtsH Extracellular	0.00018	12	25.50	144	196
RuvB_N	Holliday junction DNA helicase ruvB N-terminus	7.7E-09	26	20.00	314	419
ATPase	KaiC	0.0001	12	26.60	338	367
TsaE	Threonylcarbamoyl adenosine biosynthesis protein TsaE	0.00045	11	26.60	344	374
TIP49	TIP49 C-terminus	1.1E-06	19	23.80	345	385
Sigma54_activat	Sigma-54 interaction domain	0.00036	11	20.20	348	371
AAA_16	AAA ATPase domain	1E-06	20	32.60	349	400
IstB_IS21	IstB-like ATP binding protein	5E-05	13	24.10	350	373
AAA_5	AAA domain (dynein-related subfamily)	1.1E-05	16	20.80	351	386
AAA_22	AAA domain	9.9E-05	13	27.00	352	372
AAA_2	AAA domain (Cdc48 subfamily)	4E-07	21	20.60	352	465
AAA	ATPase family associated with various cellular activities (AAA)	0	136	20.80	352	486
Mg_chelatase	Magnesium chelatase, subunit ChlI	5E-05	13	20.30	352	370
AAA_33	AAA domain	0.00013	13	27.00	352	374
RNA_helicase	RNA helicase	0.00045	11	21.50	352	372
AAA_28	AAA domain	0.00015	13	27.00	352	387
AAA_18	AAA domain	0.0004	11	29.40	352	382
AAA_11	AAA domain	0.00053	10	27.00	352	369
AAA_17	AAA domain	0.0022	9	27.00	356	380
AAA_22	AAA domain	0.56	1	27.00	404	463
AAA_lid_3	AAA+ lid domain	8.1E-12	35	27.20	516	556
Peptidase_M41	Peptidase family M41	2.3E-05	15	20.60	578	750
Peptidase_M41	Peptidase family M41	0.43	1	20.60	804	849
AAA_17	AAA domain	0.74	1	27.00	827	854