c2pfam

AT5G64840.1 :

Domain Description Evalue Bits GA Start End
DUF5321 Family of unknown function (DUF5321) 0.0071 7 27.00 102 138
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 0.0015 9 23.10 108 141
IstB_IS21 IstB-like ATP binding protein 0.71 0 24.10 111 137
ABC_tran ABC transporter 1.4E-27 88 23.10 113 288
AAA_29 P-loop containing region of AAA domain 0.0034 8 27.00 115 138
ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain 0.027 5 20.30 115 155
RsgA_GTPase RsgA GTPase 0.073 4 30.00 119 154
AAA_25 AAA domain 0.95 0 27.00 121 138
AAA_24 AAA domain 0.0094 7 27.00 124 143
AAA_16 AAA ATPase domain 0.0028 9 32.60 124 213
MMR_HSR1 GTPase of unknown function 0.015 6 24.50 125 147
Roc Ras of Complex, Roc, domain of DAPkinase 0.08 4 27.00 125 158
AAA_23 AAA domain 0.0058 8 27.00 125 144
Dynamin_N Dynamin family 0.017 6 21.00 126 208
cobW CobW/HypB/UreG, nucleotide-binding domain 0.0065 7 20.70 126 156
AAA_30 AAA domain 0.00079 10 27.00 126 171
AAA_18 AAA domain 0.011 7 29.40 126 194
AAA_28 AAA domain 0.32 2 27.00 126 146
AAA_14 AAA domain 0.043 5 27.00 126 189
SMC_N RecF/RecN/SMC N terminal domain 0.004 8 40.00 126 326
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0008 10 27.00 127 168
AAA_22 AAA domain 0.0012 10 27.00 128 228
AAA_33 AAA domain 0.03 5 27.00 128 141
Rad17 Rad17 cell cycle checkpoint protein 0.57 1 19.70 128 171
AAA_5 AAA domain (dynein-related subfamily) 0.051 5 20.80 128 187
NACHT NACHT domain 0.48 1 20.40 128 143
AAA ATPase family associated with various cellular activities (AAA) 0.0052 8 20.80 128 233
ATPase_2 ATPase domain predominantly from Archaea 0.86 0 33.20 130 209
AAA_23 AAA domain 0.095 4 27.00 179 246
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0017 9 27.00 275 297
ABC_tran_Xtn ABC transporter 7.6E-22 68 25.90 327 414
AAA_23 AAA domain 0.48 2 27.00 357 406
IstB_IS21 IstB-like ATP binding protein 0.00012 13 24.10 374 466
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 0.04 4 23.10 436 473
AAA_29 P-loop containing region of AAA domain 7.2E-06 17 27.00 440 467
ABC_tran ABC transporter 1.9E-29 94 23.10 441 572
ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain 0.0013 9 20.30 445 472
AAA_25 AAA domain 0.0052 7 27.00 447 467
AAA_16 AAA ATPase domain 0.00013 13 32.60 449 496
ATPase_2 ATPase domain predominantly from Archaea 0.00053 11 33.20 450 475
RsgA_GTPase RsgA GTPase 0.0011 10 30.00 450 473
AAA_24 AAA domain 0.0011 10 27.00 451 473
Roc Ras of Complex, Roc, domain of DAPkinase 0.008 7 27.00 452 472
SMC_N RecF/RecN/SMC N terminal domain 0.00033 11 40.00 452 470
AAA_28 AAA domain 0.00037 12 27.00 452 471
MMR_HSR1 GTPase of unknown function 0.0017 10 24.50 452 473
AAA_18 AAA domain 0.00048 12 29.40 453 520
AAA_14 AAA domain 0.00081 10 27.00 453 477
AAA_22 AAA domain 0.00037 12 27.00 453 585
AAA_23 AAA domain 2.3E-05 16 27.00 453 470
NACHT NACHT domain 0.0005 11 20.40 453 471
Rad17 Rad17 cell cycle checkpoint protein 0.00098 10 19.70 453 470
Dynamin_N Dynamin family 0.016 6 21.00 453 477
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 9.1E-06 17 27.00 454 473
AAA_30 AAA domain 0.0015 9 27.00 454 596
cobW CobW/HypB/UreG, nucleotide-binding domain 0.0056 7 20.70 454 486
AAA_33 AAA domain 0.0046 8 27.00 455 494
AAA_5 AAA domain (dynein-related subfamily) 0.017 6 20.80 455 471
AAA ATPase family associated with various cellular activities (AAA) 0.0034 9 20.80 455 472
SMC_N RecF/RecN/SMC N terminal domain 3.5E-06 18 40.00 521 613
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0009 10 27.00 552 603
cobW CobW/HypB/UreG, nucleotide-binding domain 0.58 1 20.70 595 618
DUF5321 Family of unknown function (DUF5321) 0.00081 10 27.00 603 674
ABC_tran_Xtn ABC transporter 0.079 4 25.90 611 678
AAA_23 AAA domain 0.69 1 27.00 640 685

692

DUF5321
MeaB
IstB_IS21
ABC_tran
AAA_29
ATP-synt_ab
RsgA_GTPase
AAA_25
AAA_24
AAA_16
MMR_HSR1
Roc
AAA_23
Dynamin_N
cobW
AAA_30
AAA_18
AAA_28
AAA_14
SMC_N
AAA_21
AAA_22
AAA_33
Rad17
AAA_5
NACHT
AAA
ATPase_2
AAA_23
AAA_21
ABC_tran_Xtn
AAA_23
IstB_IS21
MeaB
AAA_29
ABC_tran
ATP-synt_ab
AAA_25
AAA_16
ATPase_2
RsgA_GTPase
AAA_24
Roc
SMC_N
AAA_28
MMR_HSR1
AAA_18
AAA_14
AAA_22
AAA_23
NACHT
Rad17
Dynamin_N
AAA_21
AAA_30
cobW
AAA_33
AAA_5
AAA
SMC_N
AAA_21
cobW
DUF5321
ABC_tran_Xtn
AAA_23

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

AAA_5
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

ABC_tran_Xtn

AAA
7646486 A 200-amino acid ATPase module in search of a basic function. Bioessays 1995;17:639-650.
9927482 AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes. Genome Res 1999;9:27-43.

IstB_IS21

MeaB

ATPase_2

ATP-synt_ab
8065448 Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria. Nature 1994;370:621-628.
9261073 The crystal structure of the nucleotide-free alpha 3 beta 3 subcomplex of F1-ATPase from the thermophilic Bacillus PS3 is a symmetric trimer. Structure 1997;5:825-836.

Roc

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

AAA_33

AAA_30

AAA_29

AAA_28

AAA_25

AAA_24

AAA_23

AAA_22

AAA_21

Dynamin_N
8939066 Dynamin GTPase, a force-generating molecular switch. Bioessays 1996;18:885-893.
2144893 Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins. Nature 1990;347:256-261.

AAA_18

AAA_16

AAA_14

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

cobW
9140970 The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase. Mol Microbiol 1997;24:119-128.
9209019 Characterization of UreG, identification of a UreD-UreF-UreG complex, and evidence suggesting that a nucleotide-binding site in UreG is required for in vivo metallocenter assembly of Klebsiella aerogenes urease. J Bacteriol 1997;179:4081-4086.
8423137 The product of the hypB gene, which is required for nickel incorporation into hydrogenases, is a novel guanine nucleotide-binding protein. J Bacteriol 1993;175:630-635.
1624427 Klebsiella aerogenes urease gene cluster: sequence of ureD and demonstration that four accessory genes (ureD, ureE, ureF, and ureG) are involved in nickel metallocenter biosynthesis. J Bacteriol 1992;174:4324-4330.
1655697 Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob J Bacteriol 1991;173:6074-6087.

Rad17
10208430 hRAD17, a structural homolog of the Schizosaccharomyces pombe RAD17 cell cycle checkpoint gene, stimulates p53 accumulation. Oncogene 1999;18:1689-1699.

DUF5321

RsgA_GTPase

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

Domain	Description	Evalue	Bits	GA	Start	End
DUF5321	Family of unknown function (DUF5321)	0.0071	7	27.00	102	138
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	0.0015	9	23.10	108	141
IstB_IS21	IstB-like ATP binding protein	0.71	0	24.10	111	137
ABC_tran	ABC transporter	1.4E-27	88	23.10	113	288
AAA_29	P-loop containing region of AAA domain	0.0034	8	27.00	115	138
ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain	0.027	5	20.30	115	155
RsgA_GTPase	RsgA GTPase	0.073	4	30.00	119	154
AAA_25	AAA domain	0.95	0	27.00	121	138
AAA_24	AAA domain	0.0094	7	27.00	124	143
AAA_16	AAA ATPase domain	0.0028	9	32.60	124	213
MMR_HSR1	GTPase of unknown function	0.015	6	24.50	125	147
Roc	Ras of Complex, Roc, domain of DAPkinase	0.08	4	27.00	125	158
AAA_23	AAA domain	0.0058	8	27.00	125	144
Dynamin_N	Dynamin family	0.017	6	21.00	126	208
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.0065	7	20.70	126	156
AAA_30	AAA domain	0.00079	10	27.00	126	171
AAA_18	AAA domain	0.011	7	29.40	126	194
AAA_28	AAA domain	0.32	2	27.00	126	146
AAA_14	AAA domain	0.043	5	27.00	126	189
SMC_N	RecF/RecN/SMC N terminal domain	0.004	8	40.00	126	326
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0008	10	27.00	127	168
AAA_22	AAA domain	0.0012	10	27.00	128	228
AAA_33	AAA domain	0.03	5	27.00	128	141
Rad17	Rad17 cell cycle checkpoint protein	0.57	1	19.70	128	171
AAA_5	AAA domain (dynein-related subfamily)	0.051	5	20.80	128	187
NACHT	NACHT domain	0.48	1	20.40	128	143
AAA	ATPase family associated with various cellular activities (AAA)	0.0052	8	20.80	128	233
ATPase_2	ATPase domain predominantly from Archaea	0.86	0	33.20	130	209
AAA_23	AAA domain	0.095	4	27.00	179	246
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0017	9	27.00	275	297
ABC_tran_Xtn	ABC transporter	7.6E-22	68	25.90	327	414
AAA_23	AAA domain	0.48	2	27.00	357	406
IstB_IS21	IstB-like ATP binding protein	0.00012	13	24.10	374	466
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	0.04	4	23.10	436	473
AAA_29	P-loop containing region of AAA domain	7.2E-06	17	27.00	440	467
ABC_tran	ABC transporter	1.9E-29	94	23.10	441	572
ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain	0.0013	9	20.30	445	472
AAA_25	AAA domain	0.0052	7	27.00	447	467
AAA_16	AAA ATPase domain	0.00013	13	32.60	449	496
ATPase_2	ATPase domain predominantly from Archaea	0.00053	11	33.20	450	475
RsgA_GTPase	RsgA GTPase	0.0011	10	30.00	450	473
AAA_24	AAA domain	0.0011	10	27.00	451	473
Roc	Ras of Complex, Roc, domain of DAPkinase	0.008	7	27.00	452	472
SMC_N	RecF/RecN/SMC N terminal domain	0.00033	11	40.00	452	470
AAA_28	AAA domain	0.00037	12	27.00	452	471
MMR_HSR1	GTPase of unknown function	0.0017	10	24.50	452	473
AAA_18	AAA domain	0.00048	12	29.40	453	520
AAA_14	AAA domain	0.00081	10	27.00	453	477
AAA_22	AAA domain	0.00037	12	27.00	453	585
AAA_23	AAA domain	2.3E-05	16	27.00	453	470
NACHT	NACHT domain	0.0005	11	20.40	453	471
Rad17	Rad17 cell cycle checkpoint protein	0.00098	10	19.70	453	470
Dynamin_N	Dynamin family	0.016	6	21.00	453	477
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	9.1E-06	17	27.00	454	473
AAA_30	AAA domain	0.0015	9	27.00	454	596
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.0056	7	20.70	454	486
AAA_33	AAA domain	0.0046	8	27.00	455	494
AAA_5	AAA domain (dynein-related subfamily)	0.017	6	20.80	455	471
AAA	ATPase family associated with various cellular activities (AAA)	0.0034	9	20.80	455	472
SMC_N	RecF/RecN/SMC N terminal domain	3.5E-06	18	40.00	521	613
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0009	10	27.00	552	603
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.58	1	20.70	595	618
DUF5321	Family of unknown function (DUF5321)	0.00081	10	27.00	603	674
ABC_tran_Xtn	ABC transporter	0.079	4	25.90	611	678
AAA_23	AAA domain	0.69	1	27.00	640	685