c2pfam

AT5G65683.1 :

Domain Description Evalue Bits GA Start End
CTU2 Cytoplasmic tRNA 2-thiolation protein 2 0.024 5 27.90 78 166
Prok-RING_4 Prokaryotic RING finger family 4 0.036 4 27.00 133 149
FANCL_C FANCL C-terminal domain 0.034 5 20.70 137 173
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 0.00014 12 27.00 138 186
DUF1272 Protein of unknown function (DUF1272) 0.0005 10 23.10 138 186
PHD PHD-finger 9.7E-05 12 27.90 139 177
zf-RING_2 Ring finger domain 4.5E-09 27 27.30 139 183
zf-RING_5 zinc-RING finger domain 1.5E-08 25 27.90 139 184
zf-rbx1 RING-H2 zinc finger domain 5.8E-07 20 31.00 139 183
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 5.7E-06 16 27.00 139 183
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 1.4E-05 15 21.00 140 183
zf-RING_UBOX RING-type zinc-finger 1.6E-05 15 25.20 140 175
zf-RING_11 RING-like zinc finger 2.3E-10 30 27.00 140 172
Prok-RING_4 Prokaryotic RING finger family 4 0.011 6 27.00 140 184
VWA_3 von Willebrand factor type A domain 1 -1 27.00 279 319
VWA_3 von Willebrand factor type A domain 7.9E-09 26 27.00 326 451
VWA von Willebrand factor type A domain 9E-15 45 23.00 326 442
VWA_2 von Willebrand factor type A domain 6.7E-13 39 27.00 327 436

717

CTU2
Prok-RING_4
FANCL_C
zf-C3HC4_3
DUF1272
PHD
zf-RING_2
zf-RING_5
zf-rbx1
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_11
Prok-RING_4
VWA_3
VWA_3
VWA
VWA_2

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

CTU2

VWA_3

VWA
1659389 More von Willebrand factor type A domains? Sequence similarities with malaria thrombospondin-related anonymous protein, dihydropyridine-sensitive calcium channel and inter-alpha-trypsin inhibitor. Biochem J 1991;279:908-911.

DUF1272

zf-RING_UBOX

zf-RING_5

zf-RING_2

zf-rbx1

VWA_2

zf-RING_11

zf-C3HC4_2

zf-C3HC4_3

Prok-RING_4

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

Domain	Description	Evalue	Bits	GA	Start	End
CTU2	Cytoplasmic tRNA 2-thiolation protein 2	0.024	5	27.90	78	166
Prok-RING_4	Prokaryotic RING finger family 4	0.036	4	27.00	133	149
FANCL_C	FANCL C-terminal domain	0.034	5	20.70	137	173
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	0.00014	12	27.00	138	186
DUF1272	Protein of unknown function (DUF1272)	0.0005	10	23.10	138	186
PHD	PHD-finger	9.7E-05	12	27.90	139	177
zf-RING_2	Ring finger domain	4.5E-09	27	27.30	139	183
zf-RING_5	zinc-RING finger domain	1.5E-08	25	27.90	139	184
zf-rbx1	RING-H2 zinc finger domain	5.8E-07	20	31.00	139	183
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	5.7E-06	16	27.00	139	183
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	1.4E-05	15	21.00	140	183
zf-RING_UBOX	RING-type zinc-finger	1.6E-05	15	25.20	140	175
zf-RING_11	RING-like zinc finger	2.3E-10	30	27.00	140	172
Prok-RING_4	Prokaryotic RING finger family 4	0.011	6	27.00	140	184
VWA_3	von Willebrand factor type A domain	1	-1	27.00	279	319
VWA_3	von Willebrand factor type A domain	7.9E-09	26	27.00	326	451
VWA	von Willebrand factor type A domain	9E-15	45	23.00	326	442
VWA_2	von Willebrand factor type A domain	6.7E-13	39	27.00	327	436