c2pfam

AT5G66070.1 :

Domain Description Evalue Bits GA Start End
DUF1269 Protein of unknown function (DUF1269) 0.002 9 21.10 31 62
DUF5862 Family of unknown function (DUF5862) 0.0012 9 33.30 32 59
Gly-zipper_YMGG YMGG-like Gly-zipper 5.5E-10 30 28.90 40 76
Gly-zipper_OmpA Glycine-zipper domain 2.1E-08 25 27.00 41 77
DUF1269 Protein of unknown function (DUF1269) 0.0042 8 21.10 41 79
Romo1 Reactive mitochondrial oxygen species modulator 1 0.065 4 21.70 41 56
Rick_17kDa_Anti Rickettsia 17 kDa surface antigen 1.2E-06 19 33.00 43 76
Gly-zipper_Omp Glycine zipper 1E-07 23 24.90 43 76
Bacteriocin_IIc Bacteriocin class II with double-glycine leader peptide 0.0031 8 27.00 44 77
Romo1 Reactive mitochondrial oxygen species modulator 1 0.0016 10 21.70 60 78
DUF5862 Family of unknown function (DUF5862) 0.095 3 33.30 62 76
DUF1269 Protein of unknown function (DUF1269) 0.37 2 21.10 120 141
FANCL_C FANCL C-terminal domain 0.00047 11 20.70 174 212
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 8.4E-05 13 27.30 174 215
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 1.1E-06 19 27.00 175 220
zf-RING_2 Ring finger domain 2E-15 48 27.30 175 218
Prok-RING_1 Prokaryotic RING finger family 1 0.0014 9 29.10 175 206
zf-RING_4 RING/Ubox like zinc-binding domain 0.0023 8 27.00 176 219
zf-RING_11 RING-like zinc finger 8.4E-12 35 27.00 176 204
zf-RING_UBOX RING-type zinc-finger 7.6E-09 26 25.20 176 215
zf-RING_5 zinc-RING finger domain 8.1E-07 20 27.90 176 219
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 2.9E-08 24 21.00 176 217
Prok-RING_4 Prokaryotic RING finger family 4 7.8E-05 13 27.00 176 220
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 3.3E-10 30 27.00 176 217
zf-rbx1 RING-H2 zinc finger domain 1.7E-10 32 31.00 188 218
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 1.3E-05 16 21.40 192 220
zf-RING-like RING-like domain 0.00031 12 21.60 193 217
Prok-RING_1 Prokaryotic RING finger family 1 0.5 1 29.10 212 220

221

DUF1269
DUF5862
Gly-zipper_YMGG
Gly-zipper_OmpA
DUF1269
Romo1
Rick_17kDa_Anti
Gly-zipper_Omp
Bacteriocin_IIc
Romo1
DUF5862
DUF1269
FANCL_C
Zn_ribbon_17
zf-C3HC4_3
zf-RING_2
Prok-RING_1
zf-RING_4
zf-RING_11
zf-RING_UBOX
zf-RING_5
zf-C3HC4
Prok-RING_4
zf-C3HC4_2
zf-rbx1
zf-ANAPC11
zf-RING-like
Prok-RING_1

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

Gly-zipper_YMGG

Gly-zipper_OmpA

Gly-zipper_Omp

zf-C3HC4_2

Romo1
16842742 A novel protein, Romo1, induces ROS production in the mitochondria. Biochem Biophys Res Commun. 2006;347:649-655.
18313394 A critical role for Romo1-derived ROS in cell proliferation. Biochem Biophys Res Commun. 2008;369:672-678.
18836179 Replicative senescence induced by Romo1-derived reactive oxygen species. J Biol Chem. 2008;283:33763-33771.
17537404 Drug resistance to 5-FU linked to reactive oxygen species modulator 1. Biochem Biophys Res Commun. 2007;359:304-310.

Bacteriocin_IIc
17074857 The blp bacteriocins of Streptococcus pneumoniae mediate intraspecies competition both in vitro and in vivo. Infect Immun. 2007;75:443-451.
17298586 Diversity of enterococcal bacteriocins and their grouping in a new classification scheme. FEMS Microbiol Rev. 2007;31:293-310.

Rick_17kDa_Anti
3139629 Expression of the gene encoding the 17-kilodalton antigen from Rickettsia rickettsii: transcription and posttranslational modification. J Bacteriol 1988;170:4493-4500.

DUF5862

zf-ANAPC11

zf-RING_UBOX

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

DUF1269

zf-RING_5

zf-RING_4

zf-RING_2

zf-rbx1

zf-RING-like

Prok-RING_1

zf-RING_11

zf-C3HC4_3

Prok-RING_4

Zn_ribbon_17

Domain	Description	Evalue	Bits	GA	Start	End
DUF1269	Protein of unknown function (DUF1269)	0.002	9	21.10	31	62
DUF5862	Family of unknown function (DUF5862)	0.0012	9	33.30	32	59
Gly-zipper_YMGG	YMGG-like Gly-zipper	5.5E-10	30	28.90	40	76
Gly-zipper_OmpA	Glycine-zipper domain	2.1E-08	25	27.00	41	77
DUF1269	Protein of unknown function (DUF1269)	0.0042	8	21.10	41	79
Romo1	Reactive mitochondrial oxygen species modulator 1	0.065	4	21.70	41	56
Rick_17kDa_Anti	Rickettsia 17 kDa surface antigen	1.2E-06	19	33.00	43	76
Gly-zipper_Omp	Glycine zipper	1E-07	23	24.90	43	76
Bacteriocin_IIc	Bacteriocin class II with double-glycine leader peptide	0.0031	8	27.00	44	77
Romo1	Reactive mitochondrial oxygen species modulator 1	0.0016	10	21.70	60	78
DUF5862	Family of unknown function (DUF5862)	0.095	3	33.30	62	76
DUF1269	Protein of unknown function (DUF1269)	0.37	2	21.10	120	141
FANCL_C	FANCL C-terminal domain	0.00047	11	20.70	174	212
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	8.4E-05	13	27.30	174	215
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	1.1E-06	19	27.00	175	220
zf-RING_2	Ring finger domain	2E-15	48	27.30	175	218
Prok-RING_1	Prokaryotic RING finger family 1	0.0014	9	29.10	175	206
zf-RING_4	RING/Ubox like zinc-binding domain	0.0023	8	27.00	176	219
zf-RING_11	RING-like zinc finger	8.4E-12	35	27.00	176	204
zf-RING_UBOX	RING-type zinc-finger	7.6E-09	26	25.20	176	215
zf-RING_5	zinc-RING finger domain	8.1E-07	20	27.90	176	219
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	2.9E-08	24	21.00	176	217
Prok-RING_4	Prokaryotic RING finger family 4	7.8E-05	13	27.00	176	220
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	3.3E-10	30	27.00	176	217
zf-rbx1	RING-H2 zinc finger domain	1.7E-10	32	31.00	188	218
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	1.3E-05	16	21.40	192	220
zf-RING-like	RING-like domain	0.00031	12	21.60	193	217
Prok-RING_1	Prokaryotic RING finger family 1	0.5	1	29.10	212	220