c2pfam

AT5G67120.1 :

Domain Description Evalue Bits GA Start End
GyrI-like GyrI-like small molecule binding domain 0.0021 9 26.00 96 135
GyrI-like GyrI-like small molecule binding domain 0.026 5 26.00 138 176
SAUGI S. aureus uracil DNA glycosylase inhibitor 0.0015 10 25.00 146 175
Rad50_zn_hook Rad50 zinc hook motif 0.016 6 21.60 211 243
Endonuclease_7 Recombination endonuclease VII 9.4E-05 13 21.00 214 269
zf-HC5HC2H PHD-like zinc-binding domain 0.00022 12 29.10 217 257
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 4.9E-06 17 27.30 223 265
Prok-RING_1 Prokaryotic RING finger family 1 0.0041 8 29.10 223 255
zf-FCS MYM-type Zinc finger with FCS sequence motif 0.00032 11 22.40 224 249
FANCL_C FANCL C-terminal domain 0.00045 11 20.70 224 262
zf-rbx1 RING-H2 zinc finger domain 4.4E-13 40 31.00 225 268
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 6.2E-08 23 27.00 225 271
zf-RING_2 Ring finger domain 4.3E-15 47 27.30 226 268
zf-RING_5 zinc-RING finger domain 2.4E-06 18 27.90 226 268
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 9E-11 32 27.00 226 267
PHD PHD-finger 0.0014 9 27.90 226 259
zf-RING_10 zinc RING finger of MSL2 0.00041 11 31.00 227 268
zf-RING_11 RING-like zinc finger 4.4E-10 30 27.00 227 254
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 4.9E-10 30 21.00 227 267
zf-RING_UBOX RING-type zinc-finger 1.6E-07 22 25.20 227 265
Prok-RING_4 Prokaryotic RING finger family 4 4.3E-05 14 27.00 227 271
zf-C3HC4_4 zinc finger of C3HC4-type, RING 0.00033 11 30.00 227 267
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 5.1E-05 14 21.40 243 270
Rad50_zn_hook Rad50 zinc hook motif 0.0071 7 21.60 262 270
Prok-RING_1 Prokaryotic RING finger family 1 0.19 2 29.10 262 270

272

GyrI-like
GyrI-like
SAUGI
Rad50_zn_hook
Endonuclease_7
zf-HC5HC2H
Zn_ribbon_17
Prok-RING_1
zf-FCS
FANCL_C
zf-rbx1
zf-C3HC4_3
zf-RING_2
zf-RING_5
zf-C3HC4_2
PHD
zf-RING_10
zf-RING_11
zf-C3HC4
zf-RING_UBOX
Prok-RING_4
zf-C3HC4_4
zf-ANAPC11
Rad50_zn_hook
Prok-RING_1

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

zf-C3HC4_4

Zn_ribbon_17

SAUGI

Prok-RING_4

zf-HC5HC2H

zf-RING_UBOX

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

zf-FCS
9716603 Consistent fusion of ZNF198 to the fibroblast growth factor receptor-1 in the t(8;13)(p11;q12) myeloproliferative syndrome. Blood 1998;92:1735-1742.
8817323 Cloning and characterization of DXS6673E, a candidate gene for X-linked mental retardation in Xq13.1. Hum Mol Genet 1996;5:887-897.
9576949 Fibroblast growth factor receptor 1 is fused to FIM in stem-cell myeloproliferative disorder with t(8;13). Proc Natl Acad Sci U S A 1998;95:5712-5717.
9694738 The t(8;13) atypical myeloproliferative disorder: further analysis of the ZNF198 gene and lack of evidence for multiple genes disrupted on chromosome 13. Blood 1998;92:1456-1458.
11689653 Common origin of four diverse families of large eukaryotic DNA viruses. J Virol. 2001;75:11720-11734.

zf-ANAPC11

zf-C3HC4_2

Rad50_zn_hook
12152085 The Rad50 zinc-hook is a structure joining Mre11 complexes in DNA recombination and repair. Nature 2002;418:562-566.
12151226 Tethering on the brink: the evolutionarily conserved Mre11-Rad50 complex. Trends Biochem Sci 2002;27:410-418.

zf-RING_5

Endonuclease_7
10075917 X-ray structure of T4 endonuclease VII: a DNA junction resolvase with a novel fold and unusual domain-swapped dimer architecture. EMBO J 1999;18:1447-1458.

zf-RING_11

zf-RING_10

zf-C3HC4_3

zf-rbx1

zf-RING_2

Prok-RING_1

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

GyrI-like

Domain	Description	Evalue	Bits	GA	Start	End
GyrI-like	GyrI-like small molecule binding domain	0.0021	9	26.00	96	135
GyrI-like	GyrI-like small molecule binding domain	0.026	5	26.00	138	176
SAUGI	S. aureus uracil DNA glycosylase inhibitor	0.0015	10	25.00	146	175
Rad50_zn_hook	Rad50 zinc hook motif	0.016	6	21.60	211	243
Endonuclease_7	Recombination endonuclease VII	9.4E-05	13	21.00	214	269
zf-HC5HC2H	PHD-like zinc-binding domain	0.00022	12	29.10	217	257
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	4.9E-06	17	27.30	223	265
Prok-RING_1	Prokaryotic RING finger family 1	0.0041	8	29.10	223	255
zf-FCS	MYM-type Zinc finger with FCS sequence motif	0.00032	11	22.40	224	249
FANCL_C	FANCL C-terminal domain	0.00045	11	20.70	224	262
zf-rbx1	RING-H2 zinc finger domain	4.4E-13	40	31.00	225	268
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	6.2E-08	23	27.00	225	271
zf-RING_2	Ring finger domain	4.3E-15	47	27.30	226	268
zf-RING_5	zinc-RING finger domain	2.4E-06	18	27.90	226	268
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	9E-11	32	27.00	226	267
PHD	PHD-finger	0.0014	9	27.90	226	259
zf-RING_10	zinc RING finger of MSL2	0.00041	11	31.00	227	268
zf-RING_11	RING-like zinc finger	4.4E-10	30	27.00	227	254
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	4.9E-10	30	21.00	227	267
zf-RING_UBOX	RING-type zinc-finger	1.6E-07	22	25.20	227	265
Prok-RING_4	Prokaryotic RING finger family 4	4.3E-05	14	27.00	227	271
zf-C3HC4_4	zinc finger of C3HC4-type, RING	0.00033	11	30.00	227	267
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	5.1E-05	14	21.40	243	270
Rad50_zn_hook	Rad50 zinc hook motif	0.0071	7	21.60	262	270
Prok-RING_1	Prokaryotic RING finger family 1	0.19	2	29.10	262	270