c2pfam

AT5G67240.1 :

Domain Description Evalue Bits GA Start End
SET_assoc Histone lysine methyltransferase SET associated 0.21 1 21.00 205 218
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.0007 9 20.70 334 393
PknH_C PknH-like extracellular domain 0.02 4 27.00 368 390
SET_assoc Histone lysine methyltransferase SET associated 0.7 -1 21.00 374 389
DUF4094 Domain of unknown function (DUF4094) 0.00086 9 24.50 403 469
HMG_CoA_synt_C Hydroxymethylglutaryl-coenzyme A synthase C terminal 0.0023 7 25.10 407 467
FAM176 FAM176 family 0.0033 6 31.50 430 469
SET_assoc Histone lysine methyltransferase SET associated 0.045 3 21.00 505 529
PknH_C PknH-like extracellular domain 0.053 3 27.00 507 529
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.00041 9 20.70 509 535
DUF3213 Protein of unknown function (DUF3213) 0.13 2 20.30 517 540
HMG_CoA_synt_C Hydroxymethylglutaryl-coenzyme A synthase C terminal 0.0057 5 25.10 539 598
DUF4094 Domain of unknown function (DUF4094) 0.55 0 24.50 567 598
FAM176 FAM176 family 0.00096 8 31.50 570 661
PknH_C PknH-like extracellular domain 0.011 5 27.00 646 667
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.00064 9 20.70 648 671
SET_assoc Histone lysine methyltransferase SET associated 0.024 4 21.00 650 669
DUF3213 Protein of unknown function (DUF3213) 0.011 5 20.30 656 681
HMG_CoA_synt_C Hydroxymethylglutaryl-coenzyme A synthase C terminal 0.0043 6 25.10 678 762
DUF3213 Protein of unknown function (DUF3213) 0.19 1 20.30 714 731
Med9 RNA polymerase II transcription mediator complex subunit 9 0.00024 10 20.50 717 771
FAM176 FAM176 family 0.28 0 31.50 718 756
DUF4094 Domain of unknown function (DUF4094) 0.0011 9 24.50 728 778
DUF3213 Protein of unknown function (DUF3213) 0.71 -1 20.30 744 759

782

SET_assoc
RRM_1
PknH_C
SET_assoc
DUF4094
HMG_CoA_synt_C
FAM176
SET_assoc
PknH_C
RRM_1
DUF3213
HMG_CoA_synt_C
DUF4094
FAM176
PknH_C
RRM_1
SET_assoc
DUF3213
HMG_CoA_synt_C
DUF3213
Med9
FAM176
DUF4094
DUF3213

References:

Med9
12584197 Identification of mammalian Mediator subunits with similarities to yeast Mediator subunits Srb5, Srb6, Med11, and Rox3. J Biol Chem 2003;278:15123-15127.
14576168 A mammalian homolog of Drosophila melanogaster transcriptional coactivator intersex is a subunit of the mammalian Mediator complex. J Biol Chem 2003;278:49671-49674.
8336709 CSE1 and CSE2, two new genes required for accurate mitotic chromosome segregation in Saccharomyces cerevisiae. Mol Cell Biol 1993;13:4691-4702.
15175151 A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II. Mol Cell. 2004;14:553-557.

DUF3213
16927360 Structure determination of a new protein from backbone-centered NMR data and NMR-assisted structure prediction. Proteins. 2006;65:480-489.

DUF4094

HMG_CoA_synt_C
2865259 Amino acid sequence of an active site peptide of avian liver mitochondrial 3-hydroxy-3-methylglutaryl-CoA synthase. J Biol Chem 1985;260:13513-13516.

RRM_1
8290338 Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors. Nucleic Acid Res 1993;21:5803-5816.

PknH_C

SET_assoc
12389037 Structure of the SET domain histone lysine methyltransferase Clr4. Nat Struct Biol 2002;0:0-0.
12575990 Structure of SET domain proteins: a new twist on histone methylation. Trends Biochem Sci 2003;28:59-62.

FAM176

Domain	Description	Evalue	Bits	GA	Start	End
SET_assoc	Histone lysine methyltransferase SET associated	0.21	1	21.00	205	218
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	0.0007	9	20.70	334	393
PknH_C	PknH-like extracellular domain	0.02	4	27.00	368	390
SET_assoc	Histone lysine methyltransferase SET associated	0.7	-1	21.00	374	389
DUF4094	Domain of unknown function (DUF4094)	0.00086	9	24.50	403	469
HMG_CoA_synt_C	Hydroxymethylglutaryl-coenzyme A synthase C terminal	0.0023	7	25.10	407	467
FAM176	FAM176 family	0.0033	6	31.50	430	469
SET_assoc	Histone lysine methyltransferase SET associated	0.045	3	21.00	505	529
PknH_C	PknH-like extracellular domain	0.053	3	27.00	507	529
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	0.00041	9	20.70	509	535
DUF3213	Protein of unknown function (DUF3213)	0.13	2	20.30	517	540
HMG_CoA_synt_C	Hydroxymethylglutaryl-coenzyme A synthase C terminal	0.0057	5	25.10	539	598
DUF4094	Domain of unknown function (DUF4094)	0.55	0	24.50	567	598
FAM176	FAM176 family	0.00096	8	31.50	570	661
PknH_C	PknH-like extracellular domain	0.011	5	27.00	646	667
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	0.00064	9	20.70	648	671
SET_assoc	Histone lysine methyltransferase SET associated	0.024	4	21.00	650	669
DUF3213	Protein of unknown function (DUF3213)	0.011	5	20.30	656	681
HMG_CoA_synt_C	Hydroxymethylglutaryl-coenzyme A synthase C terminal	0.0043	6	25.10	678	762
DUF3213	Protein of unknown function (DUF3213)	0.19	1	20.30	714	731
Med9	RNA polymerase II transcription mediator complex subunit 9	0.00024	10	20.50	717	771
FAM176	FAM176 family	0.28	0	31.50	718	756
DUF4094	Domain of unknown function (DUF4094)	0.0011	9	24.50	728	778
DUF3213	Protein of unknown function (DUF3213)	0.71	-1	20.30	744	759