c2pfam

AT5G67450.1 :

Domain Description Evalue Bits GA Start End
zf-C2H2_8 C2H2-type zinc ribbon 0.46 0 30.00 34 52
zf-CCHC_2 Zinc knuckle 0.00064 9 27.00 95 104
zf-H2C2_2 Zinc-finger double domain 0.00038 10 40.00 96 108
zf-met Zinc-finger of C2H2 type 0.00051 10 21.20 97 119
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 0.00013 12 22.60 97 119
zf-C2H2_8 C2H2-type zinc ribbon 0.0033 7 30.00 97 123
zf-C2H2 Zinc finger, C2H2 type 5.6E-06 16 20.80 97 119
zf-C2H2_6 C2H2-type zinc finger 3.2E-17 52 25.00 97 121
zf-C2H2_4 C2H2-type zinc finger 6.7E-08 23 27.00 97 119
zf-RING_11 RING-like zinc finger 0.11 2 27.00 99 112
zf-C2H2_8 C2H2-type zinc ribbon 0.00014 12 30.00 141 188
zf-H2C2_2 Zinc-finger double domain 0.0026 8 40.00 162 175
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 0.041 4 22.60 164 183
zf-C2H2 Zinc finger, C2H2 type 0.0084 6 20.80 164 176
zf-C2H2_4 C2H2-type zinc finger 0.00029 11 27.00 164 184
zf-C2H2_6 C2H2-type zinc finger 1.3E-13 40 25.00 164 188
zf-met Zinc-finger of C2H2 type 0.027 4 21.20 165 182
zf-RING_11 RING-like zinc finger 0.00013 11 27.00 166 179
zf-CCHC_2 Zinc knuckle 0.14 2 27.00 166 171

245

zf-C2H2_8
zf-CCHC_2
zf-H2C2_2
zf-met
zf-C2H2_jaz
zf-C2H2_8
zf-C2H2
zf-C2H2_6
zf-C2H2_4
zf-RING_11
zf-C2H2_8
zf-H2C2_2
zf-C2H2_jaz
zf-C2H2
zf-C2H2_4
zf-C2H2_6
zf-met
zf-RING_11
zf-CCHC_2

References:

zf-C2H2
9171100 Variations of the C2H2 zinc finger motif in the yeast genome and classification of yeast zinc finger proteins. Nucleic Acids Res 1997;25:2464-2469.
12683994 Assessment by molecular dynamics simulations of the structural determinants of DNA-binding specificity for transcription factor Sp1. J Mol Biol 2003;328:9-32.

zf-H2C2_2

zf-C2H2_6

zf-RING_11

zf-C2H2_4

zf-met

zf-CCHC_2

zf-C2H2_8

zf-C2H2_jaz
10488071 JAZ requires the double-stranded RNA-binding zinc finger motifs for nuclear localization. J Biol Chem. 1999;274:27399-27406.

Domain	Description	Evalue	Bits	GA	Start	End
zf-C2H2_8	C2H2-type zinc ribbon	0.46	0	30.00	34	52
zf-CCHC_2	Zinc knuckle	0.00064	9	27.00	95	104
zf-H2C2_2	Zinc-finger double domain	0.00038	10	40.00	96	108
zf-met	Zinc-finger of C2H2 type	0.00051	10	21.20	97	119
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	0.00013	12	22.60	97	119
zf-C2H2_8	C2H2-type zinc ribbon	0.0033	7	30.00	97	123
zf-C2H2	Zinc finger, C2H2 type	5.6E-06	16	20.80	97	119
zf-C2H2_6	C2H2-type zinc finger	3.2E-17	52	25.00	97	121
zf-C2H2_4	C2H2-type zinc finger	6.7E-08	23	27.00	97	119
zf-RING_11	RING-like zinc finger	0.11	2	27.00	99	112
zf-C2H2_8	C2H2-type zinc ribbon	0.00014	12	30.00	141	188
zf-H2C2_2	Zinc-finger double domain	0.0026	8	40.00	162	175
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	0.041	4	22.60	164	183
zf-C2H2	Zinc finger, C2H2 type	0.0084	6	20.80	164	176
zf-C2H2_4	C2H2-type zinc finger	0.00029	11	27.00	164	184
zf-C2H2_6	C2H2-type zinc finger	1.3E-13	40	25.00	164	188
zf-met	Zinc-finger of C2H2 type	0.027	4	21.20	165	182
zf-RING_11	RING-like zinc finger	0.00013	11	27.00	166	179
zf-CCHC_2	Zinc knuckle	0.14	2	27.00	166	171