c2pfam

AT5G67570.1 :

Domain Description Evalue Bits GA Start End
PPR_long Pentacotripeptide-repeat region of PRORP 0.098 1 27.00 254 324
PPR_2 PPR repeat family 1.2E-05 15 30.00 256 294
PPR_3 Pentatricopeptide repeat domain 0.0092 5 25.00 257 282
PPR PPR repeat 1.6E-05 14 25.00 257 283
PPR_1 PPR repeat 0.045 3 23.80 257 281
TPR_14 Tetratricopeptide repeat 0.2 2 23.50 260 295
TPR_19 Tetratricopeptide repeat 0.011 5 25.00 269 292
PPR_3 Pentatricopeptide repeat domain 0.07 2 25.00 290 320
TPR_14 Tetratricopeptide repeat 0.69 0 23.50 292 318
PPR PPR repeat 0.013 5 25.00 301 320
PPR_3 Pentatricopeptide repeat domain 8.2E-09 25 25.00 337 385
PPR_1 PPR repeat 0.0056 6 23.80 337 350
PPR_2 PPR repeat family 1.1E-07 21 30.00 339 379
PPR PPR repeat 0.00035 10 25.00 342 372
PPR_long Pentacotripeptide-repeat region of PRORP 1.2E-08 23 27.00 344 443
PPR PPR repeat 0.00049 10 25.00 378 406
PPR_2 PPR repeat family 1.4E-07 21 30.00 378 421
TPR_19 Tetratricopeptide repeat 0.01 5 25.00 387 434
PPR_3 Pentatricopeptide repeat domain 0.0001 11 25.00 399 442
PPR_1 PPR repeat 4E-06 16 23.80 409 438
PPR PPR repeat 1.3E-07 21 25.00 412 442
PPR_2 PPR repeat family 4E-05 13 30.00 413 442
TPR_14 Tetratricopeptide repeat 0.00034 11 23.50 414 440
PPR_1 PPR repeat 0.63 -1 23.80 455 466
PPR_2 PPR repeat family 0.0089 5 30.00 455 490
PPR_1 PPR repeat 0.034 3 23.80 477 509
PPR_2 PPR repeat family 0.00049 9 30.00 483 511
PPR_3 Pentatricopeptide repeat domain 1.6E-09 27 25.00 483 529
PPR PPR repeat 0.0004 10 25.00 483 511
PPR_long Pentacotripeptide-repeat region of PRORP 0.0011 7 27.00 498 604
PPR_1 PPR repeat 0.00031 10 23.80 512 542
PPR_2 PPR repeat family 2E-11 33 30.00 514 563
PPR PPR repeat 1.2E-07 21 25.00 518 545
TPR_14 Tetratricopeptide repeat 0.056 4 23.50 522 548
PPR_3 Pentatricopeptide repeat domain 0.017 4 25.00 537 563
PPR_1 PPR repeat 0.025 3 23.80 550 562
PPR PPR repeat 0.2 1 25.00 555 584
PPR_3 Pentatricopeptide repeat domain 0.57 -1 25.00 577 622
PPR_long Pentacotripeptide-repeat region of PRORP 0.33 -1 27.00 618 651

798

PPR_long
PPR_2
PPR_3
PPR
PPR_1
TPR_14
TPR_19
PPR_3
TPR_14
PPR
PPR_3
PPR_1
PPR_2
PPR
PPR_long
PPR
PPR_2
TPR_19
PPR_3
PPR_1
PPR
PPR_2
TPR_14
PPR_1
PPR_2
PPR_1
PPR_2
PPR_3
PPR
PPR_long
PPR_1
PPR_2
PPR
TPR_14
PPR_3
PPR_1
PPR
PPR_3
PPR_long

References:

TPR_19

TPR_14

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
PPR_long	Pentacotripeptide-repeat region of PRORP	0.098	1	27.00	254	324
PPR_2	PPR repeat family	1.2E-05	15	30.00	256	294
PPR_3	Pentatricopeptide repeat domain	0.0092	5	25.00	257	282
PPR	PPR repeat	1.6E-05	14	25.00	257	283
PPR_1	PPR repeat	0.045	3	23.80	257	281
TPR_14	Tetratricopeptide repeat	0.2	2	23.50	260	295
TPR_19	Tetratricopeptide repeat	0.011	5	25.00	269	292
PPR_3	Pentatricopeptide repeat domain	0.07	2	25.00	290	320
TPR_14	Tetratricopeptide repeat	0.69	0	23.50	292	318
PPR	PPR repeat	0.013	5	25.00	301	320
PPR_3	Pentatricopeptide repeat domain	8.2E-09	25	25.00	337	385
PPR_1	PPR repeat	0.0056	6	23.80	337	350
PPR_2	PPR repeat family	1.1E-07	21	30.00	339	379
PPR	PPR repeat	0.00035	10	25.00	342	372
PPR_long	Pentacotripeptide-repeat region of PRORP	1.2E-08	23	27.00	344	443
PPR	PPR repeat	0.00049	10	25.00	378	406
PPR_2	PPR repeat family	1.4E-07	21	30.00	378	421
TPR_19	Tetratricopeptide repeat	0.01	5	25.00	387	434
PPR_3	Pentatricopeptide repeat domain	0.0001	11	25.00	399	442
PPR_1	PPR repeat	4E-06	16	23.80	409	438
PPR	PPR repeat	1.3E-07	21	25.00	412	442
PPR_2	PPR repeat family	4E-05	13	30.00	413	442
TPR_14	Tetratricopeptide repeat	0.00034	11	23.50	414	440
PPR_1	PPR repeat	0.63	-1	23.80	455	466
PPR_2	PPR repeat family	0.0089	5	30.00	455	490
PPR_1	PPR repeat	0.034	3	23.80	477	509
PPR_2	PPR repeat family	0.00049	9	30.00	483	511
PPR_3	Pentatricopeptide repeat domain	1.6E-09	27	25.00	483	529
PPR	PPR repeat	0.0004	10	25.00	483	511
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0011	7	27.00	498	604
PPR_1	PPR repeat	0.00031	10	23.80	512	542
PPR_2	PPR repeat family	2E-11	33	30.00	514	563
PPR	PPR repeat	1.2E-07	21	25.00	518	545
TPR_14	Tetratricopeptide repeat	0.056	4	23.50	522	548
PPR_3	Pentatricopeptide repeat domain	0.017	4	25.00	537	563
PPR_1	PPR repeat	0.025	3	23.80	550	562
PPR	PPR repeat	0.2	1	25.00	555	584
PPR_3	Pentatricopeptide repeat domain	0.57	-1	25.00	577	622
PPR_long	Pentacotripeptide-repeat region of PRORP	0.33	-1	27.00	618	651