c2pfam

AT1G30330.1 :

Domain Description Evalue Bits GA Start End
B3 B3 DNA binding domain 1.2E-24 75 30.10 127 228
B3 B3 DNA binding domain 0.66 -1 30.10 234 260
Auxin_resp Auxin response factor 4.4E-37 116 21.10 253 336
RR_TM4-6 Ryanodine Receptor TM 4-6 0.0036 6 25.10 445 564
Lin-8 Ras-mediated vulval-induction antagonist 0.00095 8 25.00 478 561
Exonuc_VII_L Exonuclease VII, large subunit 0.00048 9 21.70 480 563
DUF3490 Domain of unknown function (DUF3490) 0.003 7 25.00 482 587
AUX_IAA AUX/IAA family 0.58 -1 20.80 492 578
AUX_IAA AUX/IAA family 2.2E-11 33 20.80 782 883
PB1 PB1 domain 9.8E-05 12 20.80 797 857

933

B3
B3
Auxin_resp
RR_TM4-6
Lin-8
Exonuc_VII_L
DUF3490
AUX_IAA
AUX_IAA
PB1

References:

DUF3490

PB1
8931154 Novel domains in NADPH oxidase subunits, sorting nexins, and PtdIns 3-kinases: binding partners of SH3 domains? Protein Sci 1996;5:2353-2357.
7759517 Components of a new human protein kinase signal transduction pathway. J Biol Chem 1995;270:12665-12669.
7499418 Isolation of MEK5 and differential expression of alternatively spliced forms. J Biol Chem 1995;270:28897-28902.

B3
9862967 RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants. Nucleic Acids Res 1999;27:470-478.
9188533 ARF1, a transcription factor that binds to auxin response elements. Science 1997;276:1865-1868.
9165754 The conserved B3 domain of VIVIPAROUS1 has a cooperative DNA binding activity. Plant Cell 1997;9:799-807.

AUX_IAA
9482737 The Arabidopsis gene MONOPTEROS encodes a transcription factor mediating embryo axis formation and vascular development. EMBO J 1998;17:1405-1411.

Auxin_resp
11922106 Auxin response factor family in rice. Genes Genet Syst 2001;76:373-380.

Lin-8
16020796 lin-8, which antagonizes Caenorhabditis elegans Ras-mediated vulval induction, encodes a novel nuclear protein that interacts with the LIN-35 Rb protein. Genetics. 2005;171:1017-1031.
16020796 lin-8, which antagonizes Caenorhabditis elegans Ras-mediated vulval induction, encodes a novel nuclear protein that interacts with the LIN-35 Rb protein. Genetics. 2005;171:1017-1031.

RR_TM4-6

Exonuc_VII_L
6284744 Subunit structure of Escherichia coli exonuclease VII. J Biol Chem 1982;257:8799-8805.

Domain	Description	Evalue	Bits	GA	Start	End
B3	B3 DNA binding domain	1.2E-24	75	30.10	127	228
B3	B3 DNA binding domain	0.66	-1	30.10	234	260
Auxin_resp	Auxin response factor	4.4E-37	116	21.10	253	336
RR_TM4-6	Ryanodine Receptor TM 4-6	0.0036	6	25.10	445	564
Lin-8	Ras-mediated vulval-induction antagonist	0.00095	8	25.00	478	561
Exonuc_VII_L	Exonuclease VII, large subunit	0.00048	9	21.70	480	563
DUF3490	Domain of unknown function (DUF3490)	0.003	7	25.00	482	587
AUX_IAA	AUX/IAA family	0.58	-1	20.80	492	578
AUX_IAA	AUX/IAA family	2.2E-11	33	20.80	782	883
PB1	PB1 domain	9.8E-05	12	20.80	797	857