c2pfam

AT1G30400.1 :

Domain Description Evalue Bits GA Start End
ABC_membrane ABC transporter transmembrane region 0 131 22.00 306 570
AAA_25 AAA domain 0.0015 9 27.00 621 662
ABC_tran ABC transporter 6E-21 66 23.10 632 767
AAA_29 P-loop containing region of AAA domain 0.016 6 27.00 639 663
AAA_23 AAA domain 0.021 6 27.00 643 662
AAA_22 AAA domain 0.016 6 27.00 643 673
RsgA_GTPase RsgA GTPase 0.003 8 30.00 643 669
AAA_16 AAA ATPase domain 0.0057 8 32.60 643 678
SMC_N RecF/RecN/SMC N terminal domain 0.035 4 40.00 644 665
T2SSE Type II/IV secretion system protein 0.0007 9 24.90 644 677
NACHT NACHT domain 0.05 4 20.40 644 663
Zeta_toxin Zeta toxin 0.014 5 20.10 644 675
FtsK_SpoIIIE FtsK/SpoIIIE family 0.038 4 21.20 645 664
AAA_7 P-loop containing dynein motor region 0.005 7 25.80 645 671
cobW CobW/HypB/UreG, nucleotide-binding domain 0.026 5 20.70 645 665
IIGP Interferon-inducible GTPase (IIGP) 0.082 3 19.60 645 662
MobB Molybdopterin guanine dinucleotide synthesis protein B 0.0087 7 21.60 645 669
DUF87 Domain of unknown function DUF87 0.0011 10 20.90 645 673
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.52 1 27.00 645 703
Roc Ras of Complex, Roc, domain of DAPkinase 0.024 6 27.00 645 674
TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain 0.00048 10 19.90 645 685
Dynamin_N Dynamin family 0.00071 10 21.00 645 673
MMR_HSR1 GTPase of unknown function 0.00052 11 24.50 645 669
DUF815 Protein of unknown function (DUF815) 0.06 3 20.10 647 670
SMC_N RecF/RecN/SMC N terminal domain 0.01 6 40.00 739 811
ABC_membrane ABC transporter transmembrane region 5.7E-34 109 22.00 917 1168
ABC_tran ABC transporter 2.6E-29 93 23.10 1254 1402
AAA_29 P-loop containing region of AAA domain 4.9E-05 14 27.00 1255 1286
AAA_7 P-loop containing dynein motor region 0.055 4 25.80 1260 1289
AAA_25 AAA domain 0.54 0 27.00 1260 1284
IIGP Interferon-inducible GTPase (IIGP) 0.0042 7 19.60 1266 1287
T2SSE Type II/IV secretion system protein 0.0029 7 24.90 1266 1297
TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain 0.0062 6 19.90 1266 1297
Roc Ras of Complex, Roc, domain of DAPkinase 0.012 7 27.00 1266 1285
MMR_HSR1 GTPase of unknown function 1.1E-06 19 24.50 1266 1286
Dynamin_N Dynamin family 0.00022 12 21.00 1267 1285
DUF87 Domain of unknown function DUF87 0.00062 11 20.90 1267 1297
cobW CobW/HypB/UreG, nucleotide-binding domain 0.012 6 20.70 1267 1289
DUF815 Protein of unknown function (DUF815) 0.0041 7 20.10 1267 1321
FtsK_SpoIIIE FtsK/SpoIIIE family 0.0055 7 21.20 1267 1284
MobB Molybdopterin guanine dinucleotide synthesis protein B 0.086 3 21.60 1267 1291
NACHT NACHT domain 0.099 3 20.40 1268 1286
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.00077 10 27.00 1268 1287
AAA_23 AAA domain 0.00019 13 27.00 1268 1285
SMC_N RecF/RecN/SMC N terminal domain 0.0063 7 40.00 1268 1285
AAA_16 AAA ATPase domain 0.00015 13 32.60 1269 1403
RsgA_GTPase RsgA GTPase 0.00014 13 30.00 1269 1293
AAA_22 AAA domain 0.0035 8 27.00 1269 1401
Zeta_toxin Zeta toxin 0.021 5 20.10 1269 1297
NACHT NACHT domain 0.065 4 20.40 1350 1435
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.0093 6 27.00 1351 1423
SMC_N RecF/RecN/SMC N terminal domain 5.7E-07 20 40.00 1373 1442

1622

ABC_membrane
AAA_25
ABC_tran
AAA_29
AAA_23
AAA_22
RsgA_GTPase
AAA_16
SMC_N
T2SSE
NACHT
Zeta_toxin
FtsK_SpoIIIE
AAA_7
cobW
IIGP
MobB
DUF87
AAA_21
Roc
TrwB_AAD_bind
Dynamin_N
MMR_HSR1
DUF815
SMC_N
ABC_membrane
ABC_tran
AAA_29
AAA_7
AAA_25
IIGP
T2SSE
TrwB_AAD_bind
Roc
MMR_HSR1
Dynamin_N
DUF87
cobW
DUF815
FtsK_SpoIIIE
MobB
NACHT
AAA_21
AAA_23
SMC_N
AAA_16
RsgA_GTPase
AAA_22
Zeta_toxin
NACHT
AAA_21
SMC_N

References:

Dynamin_N
8939066 Dynamin GTPase, a force-generating molecular switch. Bioessays 1996;18:885-893.
2144893 Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins. Nature 1990;347:256-261.

AAA_16

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

ABC_membrane

RsgA_GTPase

FtsK_SpoIIIE
7592387 A new Escherichia coli cell division gene, ftsK. J Bacteriol 1995;177:6211-6222.
8160014 Bacillus subtilis spoIIIE protein required for DNA segregation during asymmetric cell division. Science 1994;264:572-575.

T2SSE

cobW
9140970 The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase. Mol Microbiol 1997;24:119-128.
9209019 Characterization of UreG, identification of a UreD-UreF-UreG complex, and evidence suggesting that a nucleotide-binding site in UreG is required for in vivo metallocenter assembly of Klebsiella aerogenes urease. J Bacteriol 1997;179:4081-4086.
8423137 The product of the hypB gene, which is required for nickel incorporation into hydrogenases, is a novel guanine nucleotide-binding protein. J Bacteriol 1993;175:630-635.
1624427 Klebsiella aerogenes urease gene cluster: sequence of ureD and demonstration that four accessory genes (ureD, ureE, ureF, and ureG) are involved in nickel metallocenter biosynthesis. J Bacteriol 1992;174:4324-4330.
1655697 Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob J Bacteriol 1991;173:6074-6087.

IIGP
11907101 The IFN-inducible Golgi- and endoplasmic reticulum- associated 47-kDa GTPase IIGP is transiently expressed during listeriosis. J Immunol 2002;168:3428-3436.

Zeta_toxin
12571357 Crystal structure of the plasmid maintenance system epsilon/zeta: functional mechanism of toxin zeta and inactivation by epsilon 2 zeta 2 complex formation. Proc Natl Acad Sci U S A 2003;100:1661-1666.

AAA_7

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

DUF87

NACHT
10782090 The NACHT family - a new group of predicted NTPases implicated in apoptosis and MHC transcription activation. Trends Biochem Sci 2000;25:223-224.

Roc

AAA_29

DUF815

TrwB_AAD_bind
11214325 The bacterial conjugation protein TrwB resembles ring helicases and F1-ATPase. Nature. 2001;409:637-641.
11748238 Conjugative plasmid protein TrwB, an integral membrane type IV secretion system coupling protein. Detailed structural features and mapping of the active site cleft. J Biol Chem. 2002;277:7556-7566.

AAA_25

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

AAA_23

AAA_22

AAA_21

MobB

Domain	Description	Evalue	Bits	GA	Start	End
ABC_membrane	ABC transporter transmembrane region	0	131	22.00	306	570
AAA_25	AAA domain	0.0015	9	27.00	621	662
ABC_tran	ABC transporter	6E-21	66	23.10	632	767
AAA_29	P-loop containing region of AAA domain	0.016	6	27.00	639	663
AAA_23	AAA domain	0.021	6	27.00	643	662
AAA_22	AAA domain	0.016	6	27.00	643	673
RsgA_GTPase	RsgA GTPase	0.003	8	30.00	643	669
AAA_16	AAA ATPase domain	0.0057	8	32.60	643	678
SMC_N	RecF/RecN/SMC N terminal domain	0.035	4	40.00	644	665
T2SSE	Type II/IV secretion system protein	0.0007	9	24.90	644	677
NACHT	NACHT domain	0.05	4	20.40	644	663
Zeta_toxin	Zeta toxin	0.014	5	20.10	644	675
FtsK_SpoIIIE	FtsK/SpoIIIE family	0.038	4	21.20	645	664
AAA_7	P-loop containing dynein motor region	0.005	7	25.80	645	671
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.026	5	20.70	645	665
IIGP	Interferon-inducible GTPase (IIGP)	0.082	3	19.60	645	662
MobB	Molybdopterin guanine dinucleotide synthesis protein B	0.0087	7	21.60	645	669
DUF87	Domain of unknown function DUF87	0.0011	10	20.90	645	673
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.52	1	27.00	645	703
Roc	Ras of Complex, Roc, domain of DAPkinase	0.024	6	27.00	645	674
TrwB_AAD_bind	Type IV secretion-system coupling protein DNA-binding domain	0.00048	10	19.90	645	685
Dynamin_N	Dynamin family	0.00071	10	21.00	645	673
MMR_HSR1	GTPase of unknown function	0.00052	11	24.50	645	669
DUF815	Protein of unknown function (DUF815)	0.06	3	20.10	647	670
SMC_N	RecF/RecN/SMC N terminal domain	0.01	6	40.00	739	811
ABC_membrane	ABC transporter transmembrane region	5.7E-34	109	22.00	917	1168
ABC_tran	ABC transporter	2.6E-29	93	23.10	1254	1402
AAA_29	P-loop containing region of AAA domain	4.9E-05	14	27.00	1255	1286
AAA_7	P-loop containing dynein motor region	0.055	4	25.80	1260	1289
AAA_25	AAA domain	0.54	0	27.00	1260	1284
IIGP	Interferon-inducible GTPase (IIGP)	0.0042	7	19.60	1266	1287
T2SSE	Type II/IV secretion system protein	0.0029	7	24.90	1266	1297
TrwB_AAD_bind	Type IV secretion-system coupling protein DNA-binding domain	0.0062	6	19.90	1266	1297
Roc	Ras of Complex, Roc, domain of DAPkinase	0.012	7	27.00	1266	1285
MMR_HSR1	GTPase of unknown function	1.1E-06	19	24.50	1266	1286
Dynamin_N	Dynamin family	0.00022	12	21.00	1267	1285
DUF87	Domain of unknown function DUF87	0.00062	11	20.90	1267	1297
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.012	6	20.70	1267	1289
DUF815	Protein of unknown function (DUF815)	0.0041	7	20.10	1267	1321
FtsK_SpoIIIE	FtsK/SpoIIIE family	0.0055	7	21.20	1267	1284
MobB	Molybdopterin guanine dinucleotide synthesis protein B	0.086	3	21.60	1267	1291
NACHT	NACHT domain	0.099	3	20.40	1268	1286
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.00077	10	27.00	1268	1287
AAA_23	AAA domain	0.00019	13	27.00	1268	1285
SMC_N	RecF/RecN/SMC N terminal domain	0.0063	7	40.00	1268	1285
AAA_16	AAA ATPase domain	0.00015	13	32.60	1269	1403
RsgA_GTPase	RsgA GTPase	0.00014	13	30.00	1269	1293
AAA_22	AAA domain	0.0035	8	27.00	1269	1401
Zeta_toxin	Zeta toxin	0.021	5	20.10	1269	1297
NACHT	NACHT domain	0.065	4	20.40	1350	1435
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.0093	6	27.00	1351	1423
SMC_N	RecF/RecN/SMC N terminal domain	5.7E-07	20	40.00	1373	1442