c2pfam

AT1G30610.1 :

Domain Description Evalue Bits GA Start End
23ISL Unstructured linker between I-set domains 2 and 3 on MYLCK 0.22 1 25.00 210 257
23ISL Unstructured linker between I-set domains 2 and 3 on MYLCK 0.0078 6 25.00 284 322
23ISL Unstructured linker between I-set domains 2 and 3 on MYLCK 0.48 0 25.00 350 371
23ISL Unstructured linker between I-set domains 2 and 3 on MYLCK 0.35 1 25.00 412 439
PPR PPR repeat 0.37 1 25.00 475 492
PPR_1 PPR repeat 0.17 1 23.80 508 533
PPR PPR repeat 6.8E-05 13 25.00 509 534
PPR_2 PPR repeat family 0.0013 9 30.00 509 546
PPR_3 Pentatricopeptide repeat domain 0.37 1 25.00 541 580
PPR_3 Pentatricopeptide repeat domain 2.6E-10 30 25.00 589 638
PPR_1 PPR repeat 0.0033 7 23.80 589 602
PPR_2 PPR repeat family 6.9E-13 38 30.00 591 635
PPR PPR repeat 6E-07 19 25.00 594 623
PPR_long Pentacotripeptide-repeat region of PRORP 2.7E-05 13 27.00 596 712
Clathrin Region in Clathrin and VPS 0.00078 9 23.60 597 659
TPR_14 Tetratricopeptide repeat 1 0 23.50 600 621
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 1 -1 27.20 604 626
PPR PPR repeat 0.029 5 25.00 629 658
PPR_2 PPR repeat family 4.2E-07 20 30.00 629 672
PPR_3 Pentatricopeptide repeat domain 0.046 4 25.00 652 693
PPR_2 PPR repeat family 1.9E-05 15 30.00 660 693
PPR_1 PPR repeat 0.0012 8 23.80 660 689
TPR_14 Tetratricopeptide repeat 0.11 3 23.50 664 705
PPR PPR repeat 0.00019 11 25.00 665 693
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.014 5 27.20 669 719
TPR_19 Tetratricopeptide repeat 0.00029 11 25.00 672 717
PPR PPR repeat 0.33 1 25.00 704 719
Coatomer_E Coatomer epsilon subunit 2.4E-05 13 20.40 705 819
PPR_1 PPR repeat 0.58 0 23.80 706 720
PPR_long Pentacotripeptide-repeat region of PRORP 0.00052 9 27.00 758 824
PPR_3 Pentatricopeptide repeat domain 3.8E-13 39 25.00 758 804
PPR_1 PPR repeat 1.1E-05 15 23.80 759 787
PPR_2 PPR repeat family 2.8E-06 17 30.00 760 788
PPR PPR repeat 1.2E-06 18 25.00 761 788
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.0019 8 27.20 766 819
TPR_19 Tetratricopeptide repeat 0.0023 8 25.00 772 821
PPR_1 PPR repeat 3.7E-06 16 23.80 790 821
PPR_2 PPR repeat family 3.2E-09 27 30.00 792 824
PPR PPR repeat 3.1E-10 30 25.00 795 824
TPR_14 Tetratricopeptide repeat 0.013 6 23.50 801 820
Clathrin Region in Clathrin and VPS 0.53 0 23.60 806 827
PPR_1 PPR repeat 0.0007 9 23.80 837 851
PPR_2 PPR repeat family 1.3E-05 15 30.00 839 875
PPR_3 Pentatricopeptide repeat domain 0.086 3 25.00 839 856
PPR PPR repeat 0.002 8 25.00 842 871
PPR_3 Pentatricopeptide repeat domain 0.72 0 25.00 866 910

1006

23ISL
23ISL
23ISL
23ISL
PPR
PPR_1
PPR
PPR_2
PPR_3
PPR_3
PPR_1
PPR_2
PPR
PPR_long
Clathrin
TPR_14
ANAPC3
PPR
PPR_2
PPR_3
PPR_2
PPR_1
TPR_14
PPR
ANAPC3
TPR_19
PPR
Coatomer_E
PPR_1
PPR_long
PPR_3
PPR_1
PPR_2
PPR
ANAPC3
TPR_19
PPR_1
PPR_2
PPR
TPR_14
Clathrin
PPR_1
PPR_2
PPR_3
PPR
PPR_3

References:

23ISL

ANAPC3

TPR_19

TPR_14

Coatomer_E
10469566 Segregation of COPI-rich and anterograde-cargo-rich domains in endoplasmic-reticulum-to-Golgi transport complexes. Curr Biol 1999;9:821-824.

Clathrin
1547490 Folding and trimerization of clathrin subunits at the triskelion hub. Cell 1992;68:899-910.
3480512 Clathrin heavy chain: molecular cloning and complete primary structure. Proc Natl Acad Sci U S A 1987;84:8805-8809.

PPR_long

PPR_3

PPR_2

PPR_1

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

Domain	Description	Evalue	Bits	GA	Start	End
23ISL	Unstructured linker between I-set domains 2 and 3 on MYLCK	0.22	1	25.00	210	257
23ISL	Unstructured linker between I-set domains 2 and 3 on MYLCK	0.0078	6	25.00	284	322
23ISL	Unstructured linker between I-set domains 2 and 3 on MYLCK	0.48	0	25.00	350	371
23ISL	Unstructured linker between I-set domains 2 and 3 on MYLCK	0.35	1	25.00	412	439
PPR	PPR repeat	0.37	1	25.00	475	492
PPR_1	PPR repeat	0.17	1	23.80	508	533
PPR	PPR repeat	6.8E-05	13	25.00	509	534
PPR_2	PPR repeat family	0.0013	9	30.00	509	546
PPR_3	Pentatricopeptide repeat domain	0.37	1	25.00	541	580
PPR_3	Pentatricopeptide repeat domain	2.6E-10	30	25.00	589	638
PPR_1	PPR repeat	0.0033	7	23.80	589	602
PPR_2	PPR repeat family	6.9E-13	38	30.00	591	635
PPR	PPR repeat	6E-07	19	25.00	594	623
PPR_long	Pentacotripeptide-repeat region of PRORP	2.7E-05	13	27.00	596	712
Clathrin	Region in Clathrin and VPS	0.00078	9	23.60	597	659
TPR_14	Tetratricopeptide repeat	1	0	23.50	600	621
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	1	-1	27.20	604	626
PPR	PPR repeat	0.029	5	25.00	629	658
PPR_2	PPR repeat family	4.2E-07	20	30.00	629	672
PPR_3	Pentatricopeptide repeat domain	0.046	4	25.00	652	693
PPR_2	PPR repeat family	1.9E-05	15	30.00	660	693
PPR_1	PPR repeat	0.0012	8	23.80	660	689
TPR_14	Tetratricopeptide repeat	0.11	3	23.50	664	705
PPR	PPR repeat	0.00019	11	25.00	665	693
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.014	5	27.20	669	719
TPR_19	Tetratricopeptide repeat	0.00029	11	25.00	672	717
PPR	PPR repeat	0.33	1	25.00	704	719
Coatomer_E	Coatomer epsilon subunit	2.4E-05	13	20.40	705	819
PPR_1	PPR repeat	0.58	0	23.80	706	720
PPR_long	Pentacotripeptide-repeat region of PRORP	0.00052	9	27.00	758	824
PPR_3	Pentatricopeptide repeat domain	3.8E-13	39	25.00	758	804
PPR_1	PPR repeat	1.1E-05	15	23.80	759	787
PPR_2	PPR repeat family	2.8E-06	17	30.00	760	788
PPR	PPR repeat	1.2E-06	18	25.00	761	788
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.0019	8	27.20	766	819
TPR_19	Tetratricopeptide repeat	0.0023	8	25.00	772	821
PPR_1	PPR repeat	3.7E-06	16	23.80	790	821
PPR_2	PPR repeat family	3.2E-09	27	30.00	792	824
PPR	PPR repeat	3.1E-10	30	25.00	795	824
TPR_14	Tetratricopeptide repeat	0.013	6	23.50	801	820
Clathrin	Region in Clathrin and VPS	0.53	0	23.60	806	827
PPR_1	PPR repeat	0.0007	9	23.80	837	851
PPR_2	PPR repeat family	1.3E-05	15	30.00	839	875
PPR_3	Pentatricopeptide repeat domain	0.086	3	25.00	839	856
PPR	PPR repeat	0.002	8	25.00	842	871
PPR_3	Pentatricopeptide repeat domain	0.72	0	25.00	866	910