c2pfam

AT5G08139.1 :

Domain Description Evalue Bits GA Start End
Nop25 Nucleolar protein 12 (25kDa) 0.021 6 22.40 116 164
Nop25 Nucleolar protein 12 (25kDa) 0.14 3 22.40 239 257
zf-HC5HC2H PHD-like zinc-binding domain 0.00017 12 29.10 292 336
Prok-RING_1 Prokaryotic RING finger family 1 0.0018 9 29.10 306 335
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 2E-07 21 27.00 308 352
PHD PHD-finger 0.0039 8 27.90 308 350
zf-RING_4 RING/Ubox like zinc-binding domain 0.0031 8 27.00 309 351
RINGv RING-variant domain 0.012 6 21.60 309 349
zf-RING_5 zinc-RING finger domain 4.6E-06 17 27.90 309 350
zf-RING-like RING-like domain 0.0001 13 21.60 309 349
zf-RING_2 Ring finger domain 2E-14 44 27.30 309 350
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 2.8E-11 34 27.00 309 349
zf-rbx1 RING-H2 zinc finger domain 8E-11 33 31.00 309 350
zf-RING_11 RING-like zinc finger 3.7E-10 30 27.00 309 336
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 2.7E-09 27 21.00 309 349
zf-RING_UBOX RING-type zinc-finger 1.5E-07 22 25.20 309 347
Prok-RING_4 Prokaryotic RING finger family 4 7.8E-05 13 27.00 309 355
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 0.00081 10 27.30 309 348
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 1.2E-06 19 21.40 323 353
zf-C3H2C3 Zinc-finger 0.0042 8 27.00 323 349
FANCL_C FANCL C-terminal domain 0.0036 8 20.70 326 344
zf-P11 P-11 zinc finger 0.00079 10 24.90 327 355
Prok-RING_1 Prokaryotic RING finger family 1 0.059 4 29.10 343 357

376

Nop25
Nop25
zf-HC5HC2H
Prok-RING_1
zf-C3HC4_3
PHD
zf-RING_4
RINGv
zf-RING_5
zf-RING-like
zf-RING_2
zf-C3HC4_2
zf-rbx1
zf-RING_11
zf-C3HC4
zf-RING_UBOX
Prok-RING_4
Zn_ribbon_17
zf-ANAPC11
zf-C3H2C3
FANCL_C
zf-P11
Prok-RING_1

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

Prok-RING_4

zf-HC5HC2H

zf-RING_11

Nop25
16430885 Molecular cloning and characterization of Nop25, a novel nucleolar RNA binding protein, highly conserved in vertebrate species. Exp Cell Res. 2006;312:1031-1041.

Zn_ribbon_17

zf-ANAPC11

zf-C3H2C3

zf-RING_UBOX

zf-RING_5

zf-RING_4

zf-RING_2

zf-rbx1

zf-RING-like

RINGv

zf-C3HC4_3

zf-C3HC4_2

zf-P11

Prok-RING_1

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

Domain	Description	Evalue	Bits	GA	Start	End
Nop25	Nucleolar protein 12 (25kDa)	0.021	6	22.40	116	164
Nop25	Nucleolar protein 12 (25kDa)	0.14	3	22.40	239	257
zf-HC5HC2H	PHD-like zinc-binding domain	0.00017	12	29.10	292	336
Prok-RING_1	Prokaryotic RING finger family 1	0.0018	9	29.10	306	335
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	2E-07	21	27.00	308	352
PHD	PHD-finger	0.0039	8	27.90	308	350
zf-RING_4	RING/Ubox like zinc-binding domain	0.0031	8	27.00	309	351
RINGv	RING-variant domain	0.012	6	21.60	309	349
zf-RING_5	zinc-RING finger domain	4.6E-06	17	27.90	309	350
zf-RING-like	RING-like domain	0.0001	13	21.60	309	349
zf-RING_2	Ring finger domain	2E-14	44	27.30	309	350
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	2.8E-11	34	27.00	309	349
zf-rbx1	RING-H2 zinc finger domain	8E-11	33	31.00	309	350
zf-RING_11	RING-like zinc finger	3.7E-10	30	27.00	309	336
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	2.7E-09	27	21.00	309	349
zf-RING_UBOX	RING-type zinc-finger	1.5E-07	22	25.20	309	347
Prok-RING_4	Prokaryotic RING finger family 4	7.8E-05	13	27.00	309	355
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	0.00081	10	27.30	309	348
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	1.2E-06	19	21.40	323	353
zf-C3H2C3	Zinc-finger	0.0042	8	27.00	323	349
FANCL_C	FANCL C-terminal domain	0.0036	8	20.70	326	344
zf-P11	P-11 zinc finger	0.00079	10	24.90	327	355
Prok-RING_1	Prokaryotic RING finger family 1	0.059	4	29.10	343	357