c2pfam

AT1G30970.1 :

Domain Description Evalue Bits GA Start End
PyrI_C Aspartate carbamoyltransferase regulatory chain, metal binding domain 0.00057 9 20.80 7 26
zinc_ribbon_9 zinc-ribbon 0.0018 8 30.80 12 21
zf-C2H2_4 C2H2-type zinc finger 5.9E-05 13 27.00 13 35
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 1.7E-05 14 22.60 13 32
Rad50_zn_hook Rad50 zinc hook motif 0.00015 11 21.60 14 25
zf-C2H2 Zinc finger, C2H2 type 0.0032 7 20.80 14 35
LIM LIM domain 4.2E-05 13 20.60 14 49
PyrI_C Aspartate carbamoyltransferase regulatory chain, metal binding domain 0.012 5 20.80 25 47
Rad50_zn_hook Rad50 zinc hook motif 0.01 5 21.60 25 47
DUF629 Protein of unknown function (DUF629) 0.0005 8 20.10 29 64
zf-C2H2_jaz Zinc-finger double-stranded RNA-binding 0.0079 6 22.60 36 54
zf-C2H2 Zinc finger, C2H2 type 2.9E-05 14 20.80 36 59
zf-C2H2_4 C2H2-type zinc finger 0.00015 12 27.00 36 59
zinc_ribbon_9 zinc-ribbon 0.081 3 30.80 38 47

367

PyrI_C
zinc_ribbon_9
zf-C2H2_4
zf-C2H2_jaz
Rad50_zn_hook
zf-C2H2
LIM
PyrI_C
Rad50_zn_hook
DUF629
zf-C2H2_jaz
zf-C2H2
zf-C2H2_4
zinc_ribbon_9

References:

zf-C2H2
9171100 Variations of the C2H2 zinc finger motif in the yeast genome and classification of yeast zinc finger proteins. Nucleic Acids Res 1997;25:2464-2469.
12683994 Assessment by molecular dynamics simulations of the structural determinants of DNA-binding specificity for transcription factor Sp1. J Mol Biol 2003;328:9-32.

Rad50_zn_hook
12152085 The Rad50 zinc-hook is a structure joining Mre11 complexes in DNA recombination and repair. Nature 2002;418:562-566.
12151226 Tethering on the brink: the evolutionarily conserved Mre11-Rad50 complex. Trends Biochem Sci 2002;27:410-418.

PyrI_C
364472 Three-dimensional structures of aspartate carbamoyltransferase from Escherichia coli and of its complex with cytidine triphosphate. Proc Natl Acad Sci U S A 1978;75:5276-5280.
10651286 Insights into the mechanisms of catalysis and heterotropic regulation of Escherichia coli aspartate transcarbamoylase based upon a structure of the enzyme complexed with the bisubstrate analogue N-phosphonacetyl-L-aspartate at 2.1 A. Proteins 1999;37:729-742.

zf-C2H2_4

LIM
7664053 Structure of the carboxy-terminal Lim domain from the cysteine rich protein Crp. Nat Struct Biol 1994;1:388-398.

zinc_ribbon_9

DUF629

zf-C2H2_jaz
10488071 JAZ requires the double-stranded RNA-binding zinc finger motifs for nuclear localization. J Biol Chem. 1999;274:27399-27406.

Domain	Description	Evalue	Bits	GA	Start	End
PyrI_C	Aspartate carbamoyltransferase regulatory chain, metal binding domain	0.00057	9	20.80	7	26
zinc_ribbon_9	zinc-ribbon	0.0018	8	30.80	12	21
zf-C2H2_4	C2H2-type zinc finger	5.9E-05	13	27.00	13	35
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	1.7E-05	14	22.60	13	32
Rad50_zn_hook	Rad50 zinc hook motif	0.00015	11	21.60	14	25
zf-C2H2	Zinc finger, C2H2 type	0.0032	7	20.80	14	35
LIM	LIM domain	4.2E-05	13	20.60	14	49
PyrI_C	Aspartate carbamoyltransferase regulatory chain, metal binding domain	0.012	5	20.80	25	47
Rad50_zn_hook	Rad50 zinc hook motif	0.01	5	21.60	25	47
DUF629	Protein of unknown function (DUF629)	0.0005	8	20.10	29	64
zf-C2H2_jaz	Zinc-finger double-stranded RNA-binding	0.0079	6	22.60	36	54
zf-C2H2	Zinc finger, C2H2 type	2.9E-05	14	20.80	36	59
zf-C2H2_4	C2H2-type zinc finger	0.00015	12	27.00	36	59
zinc_ribbon_9	zinc-ribbon	0.081	3	30.80	38	47