c2pfam

AT1G31340.1 :

Domain Description Evalue Bits GA Start End
Rad60-SLD Ubiquitin-2 like Rad60 SUMO-like 1.6E-19 60 23.70 1 71
Ubiquitin_4 Ubiquitin-like domain 0.0044 7 22.80 1 32
ubiquitin Ubiquitin family 4.7E-37 116 20.70 3 74
Plexin_cytopl Plexin cytoplasmic RasGAP domain 0.012 4 20.10 8 32
DUF3861 Domain of Unknown Function with PDB structure (DUF3861) 0.004 7 27.00 9 50
DUF4361 Domain of unknown function (DUF4361) 0.0079 6 22.40 11 85
Rad60-SLD_2 Ubiquitin-2 like Rad60 SUMO-like 3.4E-05 14 23.00 11 71
Ubiquitin_2 Ubiquitin-like domain 2.9E-07 21 23.10 12 69
DUF2407 Putative membrane protein (DUF2407) 4.5E-05 14 26.10 13 63
UN_NPL4 Nuclear pore localisation protein NPL4 0.046 4 21.90 13 43
Ubiquitin_5 Ubiquitin-like domain 2.2E-05 15 23.20 14 73
TmoB Toluene-4-monooxygenase system protein B (TmoB) 0.0015 9 25.00 15 62
TBK1_ULD TANK binding kinase 1 ubiquitin-like domain 9.2E-06 16 31.00 17 51
Raf1_HTH Rubisco accumulation factor 1 helix turn helix domain 0.021 5 27.30 29 49
Ubiquitin_4 Ubiquitin-like domain 0.011 6 22.80 43 70
Plexin_cytopl Plexin cytoplasmic RasGAP domain 0.0086 5 20.10 54 103
UN_NPL4 Nuclear pore localisation protein NPL4 0.0024 8 21.90 78 120
Ubiquitin_4 Ubiquitin-like domain 0.02 5 22.80 79 109
Rad60-SLD_2 Ubiquitin-2 like Rad60 SUMO-like 8.6E-05 13 23.00 79 143
ubiquitin Ubiquitin family 2.8E-31 97 20.70 79 150
Rad60-SLD Ubiquitin-2 like Rad60 SUMO-like 4.3E-18 55 23.70 79 147
Ubiquitin_5 Ubiquitin-like domain 0.00034 11 23.20 81 141
DUF3861 Domain of Unknown Function with PDB structure (DUF3861) 0.034 4 27.00 83 126
Ubiquitin_2 Ubiquitin-like domain 5.6E-07 20 23.10 84 144
TBK1_ULD TANK binding kinase 1 ubiquitin-like domain 2.9E-07 20 31.00 89 133
DUF2407 Putative membrane protein (DUF2407) 0.00072 10 26.10 89 131
TmoB Toluene-4-monooxygenase system protein B (TmoB) 0.12 3 25.00 91 107
Raf1_HTH Rubisco accumulation factor 1 helix turn helix domain 0.0029 7 27.30 105 125
DUF4361 Domain of unknown function (DUF4361) 0.025 5 22.40 106 141
Ubiquitin_4 Ubiquitin-like domain 0.02 5 22.80 119 145

156

Rad60-SLD
Ubiquitin_4
ubiquitin
Plexin_cytopl
DUF3861
DUF4361
Rad60-SLD_2
Ubiquitin_2
DUF2407
UN_NPL4
Ubiquitin_5
TmoB
TBK1_ULD
Raf1_HTH
Ubiquitin_4
Plexin_cytopl
UN_NPL4
Ubiquitin_4
Rad60-SLD_2
ubiquitin
Rad60-SLD
Ubiquitin_5
DUF3861
Ubiquitin_2
TBK1_ULD
DUF2407
TmoB
Raf1_HTH
DUF4361
Ubiquitin_4

References:

ubiquitin
3041007 Structure of ubiquitin refined at 1.8 A resolution. J Mol Biol 1987;194:531-544.
8107144 Structure of tetraubiquitin shows how multiubiquitin chains can be formed. J Mol Biol 1994;236:601-609.
9654451 Structure determination of the small ubiquitin-related modifier SUMO-1. J Mol Biol 1998;280:275-286.
9857030 Crystal structure of the human ubiquitin-like protein NEDD8 and interactions with ubiquitin pathway enzymes. J Biol Chem 1998;273:34983-34991.
12826399 A potential proteasome-interacting motif within the ubiquitin-like domain of parkin and other proteins. Trends Biochem Sci 2003;28:280-283.

TmoB
1885512 Cloning and characterization of a Pseudomonas mendocina KR1 gene cluster encoding toluene-4-monooxygenase. J Bacteriol 1991;173:5315-5327.

DUF3861

Ubiquitin_5

Ubiquitin_4

Rad60-SLD
15660128 Structures of the SUMO E1 provide mechanistic insights into SUMO activation and E2 recruitment to E1. EMBO J. 2005;24:439-451.
19363481 Molecular mimicry of SUMO promotes DNA repair. Nat Struct Mol Biol. 2009;16:509-516.

DUF4361

Raf1_HTH

DUF2407

Plexin_cytopl
15239959 Semaphorin-plexin signaling guides patterning of the developing vasculature. Dev Cell 2004;7:117-123.
11959816 Caenorhabditis elegans PlexinA, PLX-1, interacts with transmembrane semaphorins and regulates epidermal morphogenesis. Development 2002;129:2053-2063.
8570614 A family of transmembrane proteins with homology to the MET-hepatocyte growth factor receptor. Proc Natl Acad Sci U S A 1996;93:674-678.
12559962 Plexin-A1 and plexin-B1 specifically interact at their cytoplasmic domains. Biochem Biophys Res Commun 2003;300:927-931.
11108845 The semaphorin 3A receptor may directly regulate the activity of small GTPases. FEBS Lett. 2000;486:68-72.

Rad60-SLD_2

TBK1_ULD

Ubiquitin_2

UN_NPL4
17491009 Detailed structural insights into the p97-Npl4-Ufd1 interface. J Biol Chem. 2007;282:21361-21369.

Domain	Description	Evalue	Bits	GA	Start	End
Rad60-SLD	Ubiquitin-2 like Rad60 SUMO-like	1.6E-19	60	23.70	1	71
Ubiquitin_4	Ubiquitin-like domain	0.0044	7	22.80	1	32
ubiquitin	Ubiquitin family	4.7E-37	116	20.70	3	74
Plexin_cytopl	Plexin cytoplasmic RasGAP domain	0.012	4	20.10	8	32
DUF3861	Domain of Unknown Function with PDB structure (DUF3861)	0.004	7	27.00	9	50
DUF4361	Domain of unknown function (DUF4361)	0.0079	6	22.40	11	85
Rad60-SLD_2	Ubiquitin-2 like Rad60 SUMO-like	3.4E-05	14	23.00	11	71
Ubiquitin_2	Ubiquitin-like domain	2.9E-07	21	23.10	12	69
DUF2407	Putative membrane protein (DUF2407)	4.5E-05	14	26.10	13	63
UN_NPL4	Nuclear pore localisation protein NPL4	0.046	4	21.90	13	43
Ubiquitin_5	Ubiquitin-like domain	2.2E-05	15	23.20	14	73
TmoB	Toluene-4-monooxygenase system protein B (TmoB)	0.0015	9	25.00	15	62
TBK1_ULD	TANK binding kinase 1 ubiquitin-like domain	9.2E-06	16	31.00	17	51
Raf1_HTH	Rubisco accumulation factor 1 helix turn helix domain	0.021	5	27.30	29	49
Ubiquitin_4	Ubiquitin-like domain	0.011	6	22.80	43	70
Plexin_cytopl	Plexin cytoplasmic RasGAP domain	0.0086	5	20.10	54	103
UN_NPL4	Nuclear pore localisation protein NPL4	0.0024	8	21.90	78	120
Ubiquitin_4	Ubiquitin-like domain	0.02	5	22.80	79	109
Rad60-SLD_2	Ubiquitin-2 like Rad60 SUMO-like	8.6E-05	13	23.00	79	143
ubiquitin	Ubiquitin family	2.8E-31	97	20.70	79	150
Rad60-SLD	Ubiquitin-2 like Rad60 SUMO-like	4.3E-18	55	23.70	79	147
Ubiquitin_5	Ubiquitin-like domain	0.00034	11	23.20	81	141
DUF3861	Domain of Unknown Function with PDB structure (DUF3861)	0.034	4	27.00	83	126
Ubiquitin_2	Ubiquitin-like domain	5.6E-07	20	23.10	84	144
TBK1_ULD	TANK binding kinase 1 ubiquitin-like domain	2.9E-07	20	31.00	89	133
DUF2407	Putative membrane protein (DUF2407)	0.00072	10	26.10	89	131
TmoB	Toluene-4-monooxygenase system protein B (TmoB)	0.12	3	25.00	91	107
Raf1_HTH	Rubisco accumulation factor 1 helix turn helix domain	0.0029	7	27.30	105	125
DUF4361	Domain of unknown function (DUF4361)	0.025	5	22.40	106	141
Ubiquitin_4	Ubiquitin-like domain	0.02	5	22.80	119	145