c2pfam

AT1G31430.1 :

Domain Description Evalue Bits GA Start End
PPR_3 Pentatricopeptide repeat domain 0.064 4 25.00 9 57
PPR_2 PPR repeat family 1.5E-05 15 30.00 11 55
PPR PPR repeat 0.0058 7 25.00 13 41
Mtf2 Mtf2 family 0.027 4 27.00 13 54
PPR_3 Pentatricopeptide repeat domain 0.0017 9 25.00 73 108
PPR_1 PPR repeat 0.068 3 23.80 80 107
PPR_2 PPR repeat family 8.5E-05 13 30.00 83 111
PPR PPR repeat 4E-05 14 25.00 85 111
PPR_2 PPR repeat family 2.7E-09 27 30.00 110 158
PPR_1 PPR repeat 1E-06 19 23.80 110 139
PPR_3 Pentatricopeptide repeat domain 0.0014 9 25.00 110 141
PPR PPR repeat 2.1E-09 28 25.00 113 140
TPR_14 Tetratricopeptide repeat 0.11 4 23.50 118 138
TPR_16 Tetratricopeptide repeat 0.082 4 32.70 120 137
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.79 0 27.20 121 142
TPR_7 Tetratricopeptide repeat 0.033 5 27.90 122 137
TPR_19 Tetratricopeptide repeat 0.036 5 25.00 124 142
PPR_long Pentacotripeptide-repeat region of PRORP 0.011 5 27.00 129 214
RPN7 26S proteasome subunit RPN7 0.003 7 25.30 152 214
PPR_3 Pentatricopeptide repeat domain 0.057 4 25.00 178 214
PPR_1 PPR repeat 4.1E-07 20 23.80 186 209
PPR PPR repeat 3.1E-08 24 25.00 186 213
PPR_2 PPR repeat family 1.2E-06 19 30.00 186 214
DUF3368 Domain of unknown function (DUF3368) 0.19 2 27.30 196 212
TPR_19 Tetratricopeptide repeat 0.018 6 25.00 200 240
PPR_2 PPR repeat family 0.00051 11 30.00 211 237
PPR_1 PPR repeat 0.00094 9 23.80 212 237
PPR PPR repeat 3.2E-06 18 25.00 215 238
TPR_14 Tetratricopeptide repeat 0.058 5 23.50 216 250
TPR_10 Tetratricopeptide repeat 0.046 4 27.50 223 239
TPR_12 Tetratricopeptide repeat 0.84 0 30.10 225 239
TPR_4 Tetratricopeptide repeat 0.05 5 22.00 226 238
PPR_2 PPR repeat family 4.5E-13 40 30.00 242 290
PPR_1 PPR repeat 1.6E-06 18 23.80 243 270
PPR_3 Pentatricopeptide repeat domain 0.0062 7 25.00 243 278
Mtf2 Mtf2 family 0.15 2 27.00 244 276
PPR PPR repeat 8.1E-11 32 25.00 245 275
TPR_14 Tetratricopeptide repeat 0.045 5 23.50 246 268
TPR_19 Tetratricopeptide repeat 0.21 2 25.00 247 266
PPR_long Pentacotripeptide-repeat region of PRORP 0.0066 6 27.00 251 312
TPR_16 Tetratricopeptide repeat 0.32 2 32.70 252 268
TPR_10 Tetratricopeptide repeat 0.052 4 27.50 253 268
TPR_12 Tetratricopeptide repeat 0.17 3 30.10 254 268
TPR_7 Tetratricopeptide repeat 0.13 3 27.90 254 268
TPR_4 Tetratricopeptide repeat 0.57 2 22.00 257 268
PPR_3 Pentatricopeptide repeat domain 0.00048 11 25.00 266 310
PPR PPR repeat 0.51 1 25.00 284 302
PPR_3 Pentatricopeptide repeat domain 0.06 4 25.00 313 343
PPR_2 PPR repeat family 0.0027 8 30.00 315 343
PPR PPR repeat 8.4E-07 19 25.00 318 343
PPR_1 PPR repeat 0.042 4 23.80 318 339
RPN7 26S proteasome subunit RPN7 0.032 4 25.30 319 347
PPR_1 PPR repeat 0.0019 8 23.80 343 372
PPR_2 PPR repeat family 8.4E-10 29 30.00 344 390
PPR PPR repeat 5.1E-08 23 25.00 347 376
PPR_long Pentacotripeptide-repeat region of PRORP 2.6E-09 27 27.00 363 484
Mtf2 Mtf2 family 0.38 1 27.00 366 387
PPR_3 Pentatricopeptide repeat domain 0.00024 11 25.00 369 408
PPR PPR repeat 0.0044 8 25.00 381 409
PPR_3 Pentatricopeptide repeat domain 0.0088 6 25.00 402 443
PPR PPR repeat 1.1E-08 25 25.00 419 444
PPR_2 PPR repeat family 4.3E-05 14 30.00 419 443
PPR_1 PPR repeat 6.9E-10 29 23.80 420 443
TPR_14 Tetratricopeptide repeat 0.22 3 23.50 421 442
TPR_19 Tetratricopeptide repeat 0.028 5 25.00 422 442
DUF3368 Domain of unknown function (DUF3368) 0.0013 9 27.30 422 443
TPR_12 Tetratricopeptide repeat 0.39 1 30.10 422 440
RPN7 26S proteasome subunit RPN7 0.14 2 25.30 423 479
TPR_4 Tetratricopeptide repeat 0.46 2 22.00 424 440
TPR_16 Tetratricopeptide repeat 0.72 1 32.70 425 444
TNFR_16_TM Tumor necrosis factor receptor member 16 trans-membrane domain 0.00022 12 25.60 448 460
PPR_3 Pentatricopeptide repeat domain 0.00015 12 25.00 454 482
TPR_14 Tetratricopeptide repeat 0.013 7 23.50 457 493
TPR_16 Tetratricopeptide repeat 0.028 5 32.70 461 502
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.0064 7 27.20 464 511
TPR_19 Tetratricopeptide repeat 0.8 1 25.00 481 503
TPR_7 Tetratricopeptide repeat 0.12 3 27.90 488 504
PPR PPR repeat 0.001 10 25.00 489 516
PPR_2 PPR repeat family 0.52 1 30.00 493 516

570

PPR_3
PPR_2
PPR
Mtf2
PPR_3
PPR_1
PPR_2
PPR
PPR_2
PPR_1
PPR_3
PPR
TPR_14
TPR_16
ANAPC3
TPR_7
TPR_19
PPR_long
RPN7
PPR_3
PPR_1
PPR
PPR_2
DUF3368
TPR_19
PPR_2
PPR_1
PPR
TPR_14
TPR_10
TPR_12
TPR_4
PPR_2
PPR_1
PPR_3
Mtf2
PPR
TPR_14
TPR_19
PPR_long
TPR_16
TPR_10
TPR_12
TPR_7
TPR_4
PPR_3
PPR
PPR_3
PPR_2
PPR
PPR_1
RPN7
PPR_1
PPR_2
PPR
PPR_long
Mtf2
PPR_3
PPR
PPR_3
PPR
PPR_2
PPR_1
TPR_14
TPR_19
DUF3368
TPR_12
RPN7
TPR_4
TPR_16
TNFR_16_TM
PPR_3
TPR_14
TPR_16
ANAPC3
TPR_19
TPR_7
PPR
PPR_2

References:

TPR_7

TPR_4

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

TPR_14

TPR_19

PPR_long

PPR_3

PPR_2

PPR_1

TPR_10

TPR_16

TNFR_16_TM

ANAPC3

Mtf2

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

DUF3368

TPR_12

Domain	Description	Evalue	Bits	GA	Start	End
PPR_3	Pentatricopeptide repeat domain	0.064	4	25.00	9	57
PPR_2	PPR repeat family	1.5E-05	15	30.00	11	55
PPR	PPR repeat	0.0058	7	25.00	13	41
Mtf2	Mtf2 family	0.027	4	27.00	13	54
PPR_3	Pentatricopeptide repeat domain	0.0017	9	25.00	73	108
PPR_1	PPR repeat	0.068	3	23.80	80	107
PPR_2	PPR repeat family	8.5E-05	13	30.00	83	111
PPR	PPR repeat	4E-05	14	25.00	85	111
PPR_2	PPR repeat family	2.7E-09	27	30.00	110	158
PPR_1	PPR repeat	1E-06	19	23.80	110	139
PPR_3	Pentatricopeptide repeat domain	0.0014	9	25.00	110	141
PPR	PPR repeat	2.1E-09	28	25.00	113	140
TPR_14	Tetratricopeptide repeat	0.11	4	23.50	118	138
TPR_16	Tetratricopeptide repeat	0.082	4	32.70	120	137
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.79	0	27.20	121	142
TPR_7	Tetratricopeptide repeat	0.033	5	27.90	122	137
TPR_19	Tetratricopeptide repeat	0.036	5	25.00	124	142
PPR_long	Pentacotripeptide-repeat region of PRORP	0.011	5	27.00	129	214
RPN7	26S proteasome subunit RPN7	0.003	7	25.30	152	214
PPR_3	Pentatricopeptide repeat domain	0.057	4	25.00	178	214
PPR_1	PPR repeat	4.1E-07	20	23.80	186	209
PPR	PPR repeat	3.1E-08	24	25.00	186	213
PPR_2	PPR repeat family	1.2E-06	19	30.00	186	214
DUF3368	Domain of unknown function (DUF3368)	0.19	2	27.30	196	212
TPR_19	Tetratricopeptide repeat	0.018	6	25.00	200	240
PPR_2	PPR repeat family	0.00051	11	30.00	211	237
PPR_1	PPR repeat	0.00094	9	23.80	212	237
PPR	PPR repeat	3.2E-06	18	25.00	215	238
TPR_14	Tetratricopeptide repeat	0.058	5	23.50	216	250
TPR_10	Tetratricopeptide repeat	0.046	4	27.50	223	239
TPR_12	Tetratricopeptide repeat	0.84	0	30.10	225	239
TPR_4	Tetratricopeptide repeat	0.05	5	22.00	226	238
PPR_2	PPR repeat family	4.5E-13	40	30.00	242	290
PPR_1	PPR repeat	1.6E-06	18	23.80	243	270
PPR_3	Pentatricopeptide repeat domain	0.0062	7	25.00	243	278
Mtf2	Mtf2 family	0.15	2	27.00	244	276
PPR	PPR repeat	8.1E-11	32	25.00	245	275
TPR_14	Tetratricopeptide repeat	0.045	5	23.50	246	268
TPR_19	Tetratricopeptide repeat	0.21	2	25.00	247	266
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0066	6	27.00	251	312
TPR_16	Tetratricopeptide repeat	0.32	2	32.70	252	268
TPR_10	Tetratricopeptide repeat	0.052	4	27.50	253	268
TPR_12	Tetratricopeptide repeat	0.17	3	30.10	254	268
TPR_7	Tetratricopeptide repeat	0.13	3	27.90	254	268
TPR_4	Tetratricopeptide repeat	0.57	2	22.00	257	268
PPR_3	Pentatricopeptide repeat domain	0.00048	11	25.00	266	310
PPR	PPR repeat	0.51	1	25.00	284	302
PPR_3	Pentatricopeptide repeat domain	0.06	4	25.00	313	343
PPR_2	PPR repeat family	0.0027	8	30.00	315	343
PPR	PPR repeat	8.4E-07	19	25.00	318	343
PPR_1	PPR repeat	0.042	4	23.80	318	339
RPN7	26S proteasome subunit RPN7	0.032	4	25.30	319	347
PPR_1	PPR repeat	0.0019	8	23.80	343	372
PPR_2	PPR repeat family	8.4E-10	29	30.00	344	390
PPR	PPR repeat	5.1E-08	23	25.00	347	376
PPR_long	Pentacotripeptide-repeat region of PRORP	2.6E-09	27	27.00	363	484
Mtf2	Mtf2 family	0.38	1	27.00	366	387
PPR_3	Pentatricopeptide repeat domain	0.00024	11	25.00	369	408
PPR	PPR repeat	0.0044	8	25.00	381	409
PPR_3	Pentatricopeptide repeat domain	0.0088	6	25.00	402	443
PPR	PPR repeat	1.1E-08	25	25.00	419	444
PPR_2	PPR repeat family	4.3E-05	14	30.00	419	443
PPR_1	PPR repeat	6.9E-10	29	23.80	420	443
TPR_14	Tetratricopeptide repeat	0.22	3	23.50	421	442
TPR_19	Tetratricopeptide repeat	0.028	5	25.00	422	442
DUF3368	Domain of unknown function (DUF3368)	0.0013	9	27.30	422	443
TPR_12	Tetratricopeptide repeat	0.39	1	30.10	422	440
RPN7	26S proteasome subunit RPN7	0.14	2	25.30	423	479
TPR_4	Tetratricopeptide repeat	0.46	2	22.00	424	440
TPR_16	Tetratricopeptide repeat	0.72	1	32.70	425	444
TNFR_16_TM	Tumor necrosis factor receptor member 16 trans-membrane domain	0.00022	12	25.60	448	460
PPR_3	Pentatricopeptide repeat domain	0.00015	12	25.00	454	482
TPR_14	Tetratricopeptide repeat	0.013	7	23.50	457	493
TPR_16	Tetratricopeptide repeat	0.028	5	32.70	461	502
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.0064	7	27.20	464	511
TPR_19	Tetratricopeptide repeat	0.8	1	25.00	481	503
TPR_7	Tetratricopeptide repeat	0.12	3	27.90	488	504
PPR	PPR repeat	0.001	10	25.00	489	516
PPR_2	PPR repeat family	0.52	1	30.00	493	516