c2pfam

AT1G31970.1 :

Domain Description Evalue Bits GA Start End
ALMT Aluminium activated malate transporter 0.0063 5 20.60 14 116
Hamartin Hamartin protein 0.00042 9 20.50 17 132
DUF4778 Domain of unknown function (DUF4778) 0.00011 12 27.00 20 101
Red1 Rec10 / Red1 0.00087 7 25.00 22 131
Med19 Mediator of RNA pol II transcription subunit 19 0.0019 8 25.00 23 84
Dynactin_p62 Dynactin p62 family 0.00098 8 20.90 46 126
DEAD DEAD/DEAH box helicase 0 165 20.60 139 313
UTP25 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 1 -2 32.80 191 211
RibD_C RibD C-terminal domain 0.11 2 20.50 196 229
CMS1 U3-containing 90S pre-ribosomal complex subunit 1.4E-06 18 35.00 239 273
UTP25 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 0.09 1 32.80 243 297
AAA_22 AAA domain 0.0013 9 27.00 250 285
RibD_C RibD C-terminal domain 0.2 1 20.50 279 299
RibD_C RibD C-terminal domain 0.00053 10 20.50 301 398
AAA_22 AAA domain 0.91 0 27.00 339 371
Helicase_C Helicase conserved C-terminal domain 4.1E-32 101 20.90 352 461
ERCC3_RAD25_C ERCC3/RAD25/XPB C-terminal helicase 1.3E-07 21 27.00 356 466
UTP25 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 0.00036 9 32.80 356 448
DEAD DEAD/DEAH box helicase 0.62 0 20.60 376 423

537

ALMT
Hamartin
DUF4778
Red1
Med19
Dynactin_p62
DEAD
UTP25
RibD_C
CMS1
UTP25
AAA_22
RibD_C
RibD_C
AAA_22
Helicase_C
ERCC3_RAD25_C
UTP25
DEAD

References:

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

RibD_C

Red1
15226405 S. pombe meiotic linear elements contain proteins related to synaptonemal complex components. J Cell Sci 2004;117:3343-3351.

Helicase_C

DUF4778

Dynactin_p62
10607597 Interaction of the p62 subunit of dynactin with Arp1 and the cortical actin cytoskeleton. Curr Biol 1999;9:1497-1500.
10671518 A dynactin subunit with a highly conserved cysteine-rich motif interacts directly with Arp1. J Biol Chem 2000;275:4834-4839.

UTP25

ALMT
16740662 AtALMT1, which encodes a malate transporter, is identified as one of several genes critical for aluminum tolerance in Arabidopsis. Proc Natl Acad Sci U S A. 2006;103:9738-9743.

CMS1

ERCC3_RAD25_C

Med19
12584197 Identification of mammalian Mediator subunits with similarities to yeast Mediator subunits Srb5, Srb6, Med11, and Rox3. J Biol Chem 2003;278:15123-15127.

AAA_22

Hamartin
12167664 PI3K/AKT pathway regulates TSC tumor suppressor complex by phosphorylation of tuberin. J Biol Chem 2002;0:0-0.

Domain	Description	Evalue	Bits	GA	Start	End
ALMT	Aluminium activated malate transporter	0.0063	5	20.60	14	116
Hamartin	Hamartin protein	0.00042	9	20.50	17	132
DUF4778	Domain of unknown function (DUF4778)	0.00011	12	27.00	20	101
Red1	Rec10 / Red1	0.00087	7	25.00	22	131
Med19	Mediator of RNA pol II transcription subunit 19	0.0019	8	25.00	23	84
Dynactin_p62	Dynactin p62 family	0.00098	8	20.90	46	126
DEAD	DEAD/DEAH box helicase	0	165	20.60	139	313
UTP25	Utp25, U3 small nucleolar RNA-associated SSU processome protein 25	1	-2	32.80	191	211
RibD_C	RibD C-terminal domain	0.11	2	20.50	196	229
CMS1	U3-containing 90S pre-ribosomal complex subunit	1.4E-06	18	35.00	239	273
UTP25	Utp25, U3 small nucleolar RNA-associated SSU processome protein 25	0.09	1	32.80	243	297
AAA_22	AAA domain	0.0013	9	27.00	250	285
RibD_C	RibD C-terminal domain	0.2	1	20.50	279	299
RibD_C	RibD C-terminal domain	0.00053	10	20.50	301	398
AAA_22	AAA domain	0.91	0	27.00	339	371
Helicase_C	Helicase conserved C-terminal domain	4.1E-32	101	20.90	352	461
ERCC3_RAD25_C	ERCC3/RAD25/XPB C-terminal helicase	1.3E-07	21	27.00	356	466
UTP25	Utp25, U3 small nucleolar RNA-associated SSU processome protein 25	0.00036	9	32.80	356	448
DEAD	DEAD/DEAH box helicase	0.62	0	20.60	376	423