c2pfam

AT1G32415.1 :

Domain Description Evalue Bits GA Start End
PPR_3 Pentatricopeptide repeat domain 0.038 5 25.00 66 106
PPR_2 PPR repeat family 7.5E-06 17 30.00 77 108
PPR_1 PPR repeat 0.00016 12 23.80 77 103
PPR PPR repeat 6.5E-08 23 25.00 80 108
AEP1 ATPase expression protein 1 0.16 1 27.00 81 119
TPR_19 Tetratricopeptide repeat 0.5 1 25.00 87 106
TPR_4 Tetratricopeptide repeat 0.86 1 22.00 88 101
PPR_1 PPR repeat 2E-05 15 23.80 106 134
PPR_2 PPR repeat family 2.3E-11 34 30.00 106 137
PPR_3 Pentatricopeptide repeat domain 0.00047 11 25.00 107 138
PPR PPR repeat 2.7E-09 27 25.00 109 136
Coatomer_E Coatomer epsilon subunit 0.32 1 20.40 112 188
PPR_long Pentacotripeptide-repeat region of PRORP 0.16 2 27.00 121 180
TPR_19 Tetratricopeptide repeat 0.17 3 25.00 133 168
TPR_17 Tetratricopeptide repeat 0.088 4 24.40 135 159
PPR_2 PPR repeat family 9.5E-12 35 30.00 136 169
PPR_1 PPR repeat 2.6E-09 27 23.80 137 164
PPR_3 Pentatricopeptide repeat domain 0.0071 7 25.00 137 167
PPR PPR repeat 1.8E-10 31 25.00 139 169
TPR_7 Tetratricopeptide repeat 0.18 3 27.90 147 163
TPR_19 Tetratricopeptide repeat 0.0033 8 25.00 150 199
PPR_1 PPR repeat 7.8E-09 26 23.80 167 195
PPR_2 PPR repeat family 9.2E-10 29 30.00 167 199
PPR_3 Pentatricopeptide repeat domain 9.8E-05 13 25.00 168 207
PPR PPR repeat 1.1E-09 29 25.00 170 199
TPR_14 Tetratricopeptide repeat 0.11 4 23.50 172 197
Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain 0.16 2 22.80 180 201
TPR_8 Tetratricopeptide repeat 0.18 3 25.70 180 192
PPR_long Pentacotripeptide-repeat region of PRORP 0.19 1 27.00 182 252
PPR_2 PPR repeat family 1.6E-09 28 30.00 198 231
PPR_1 PPR repeat 0.00047 10 23.80 198 226
PPR_3 Pentatricopeptide repeat domain 0.73 0 25.00 199 229
PPR PPR repeat 1E-08 26 25.00 201 231
Coatomer_E Coatomer epsilon subunit 0.72 -1 20.40 204 230
AEP1 ATPase expression protein 1 0.44 0 27.00 205 241
PPR_3 Pentatricopeptide repeat domain 0.011 6 25.00 229 261
PPR_2 PPR repeat family 2.1E-11 34 30.00 229 262
PPR_1 PPR repeat 5.6E-12 36 23.80 230 257
PPR PPR repeat 5.7E-12 36 25.00 232 262
PPR_1 PPR repeat 0.00054 10 23.80 260 289
PPR_2 PPR repeat family 3.4E-10 30 30.00 260 301
PPR_3 Pentatricopeptide repeat domain 0.0034 8 25.00 261 298
PPR PPR repeat 6.8E-10 29 25.00 263 290
RPN7 26S proteasome subunit RPN7 0.94 -1 25.30 337 367
PPR PPR repeat 0.083 4 25.00 344 364
PPR_1 PPR repeat 0.19 2 23.80 344 364
AEP1 ATPase expression protein 1 0.01 5 27.00 364 412
Ribonuc_red_lgN Ribonucleotide reductase, all-alpha domain 0.01 6 22.80 365 394
PPR_3 Pentatricopeptide repeat domain 0.00073 10 25.00 366 396
PPR_2 PPR repeat family 1.9E-05 15 30.00 370 393
PPR PPR repeat 1.2E-06 19 25.00 370 396
PPR_1 PPR repeat 0.00051 10 23.80 372 393
RPN7 26S proteasome subunit RPN7 0.15 2 25.30 375 411
TPR_16 Tetratricopeptide repeat 0.028 6 32.70 376 394
TPR_7 Tetratricopeptide repeat 0.022 6 27.90 378 394
TPR_14 Tetratricopeptide repeat 0.045 5 23.50 378 397
TPR_8 Tetratricopeptide repeat 0.048 5 25.70 378 396
TPR_6 Tetratricopeptide repeat 0.088 4 26.30 378 396
TPR_4 Tetratricopeptide repeat 0.11 4 22.00 379 393
TPR_19 Tetratricopeptide repeat 0.09 4 25.00 379 425
PPR_1 PPR repeat 1.4E-05 15 23.80 399 425
PPR_2 PPR repeat family 6.4E-07 20 30.00 399 428
PPR PPR repeat 1.8E-08 25 25.00 401 429
PPR_3 Pentatricopeptide repeat domain 0.25 2 25.00 401 428
TPR_14 Tetratricopeptide repeat 0.081 5 23.50 404 431
RPN7 26S proteasome subunit RPN7 0.23 2 25.30 407 429
TPR_6 Tetratricopeptide repeat 0.2 3 26.30 410 429
PPR_3 Pentatricopeptide repeat domain 0.015 6 25.00 430 476
PPR_2 PPR repeat family 1.1E-12 38 30.00 430 474
PPR_1 PPR repeat 0.00044 10 23.80 430 458
PPR PPR repeat 4.6E-09 27 25.00 432 462
PPR_long Pentacotripeptide-repeat region of PRORP 0.0084 6 27.00 438 530
PPR_1 PPR repeat 2.3E-05 15 23.80 500 530
PPR_2 PPR repeat family 2.6E-05 15 30.00 501 532
PPR_3 Pentatricopeptide repeat domain 0.011 6 25.00 501 532
Coatomer_E Coatomer epsilon subunit 0.0065 6 20.40 505 566
RPN7 26S proteasome subunit RPN7 0.0093 6 25.30 506 544
AEP1 ATPase expression protein 1 0.29 0 27.00 506 540
PPR PPR repeat 1.3E-06 19 25.00 507 532
NatB_MDM20 N-acetyltransferase B complex (NatB) non catalytic subunit 0.00039 10 20.50 509 561
Toxin_YhaV Toxin with endonuclease activity YhaV 0.0051 7 22.80 516 535
PPR_1 PPR repeat 1.2E-07 22 23.80 530 560
PPR_3 Pentatricopeptide repeat domain 0.00035 11 25.00 531 579
PPR_2 PPR repeat family 4.4E-15 46 30.00 532 580
PPR PPR repeat 8.4E-12 35 25.00 535 564
PPR_long Pentacotripeptide-repeat region of PRORP 0.0015 8 27.00 550 628
Toxin_YhaV Toxin with endonuclease activity YhaV 0.1 3 22.80 551 571
PPR_3 Pentatricopeptide repeat domain 1.4E-05 16 25.00 556 616
PPR_1 PPR repeat 0.18 2 23.80 564 596
PPR PPR repeat 8.8E-05 13 25.00 570 597
PPR_2 PPR repeat family 0.068 4 30.00 575 603
PPR_3 Pentatricopeptide repeat domain 0.02 5 25.00 600 648
PPR_1 PPR repeat 0.00029 11 23.80 605 627
PPR_2 PPR repeat family 0.046 4 30.00 607 628
PPR PPR repeat 6.3E-05 14 25.00 608 628
TPR_19 Tetratricopeptide repeat 0.14 3 25.00 611 634
TPR_16 Tetratricopeptide repeat 0.53 2 32.70 660 692
TPR_17 Tetratricopeptide repeat 0.11 4 24.40 665 694
TPR_19 Tetratricopeptide repeat 0.69 1 25.00 666 692
TPR_4 Tetratricopeptide repeat 0.071 5 22.00 677 692
PPR PPR repeat 0.39 2 25.00 683 706

761

PPR_3
PPR_2
PPR_1
PPR
AEP1
TPR_19
TPR_4
PPR_1
PPR_2
PPR_3
PPR
Coatomer_E
PPR_long
TPR_19
TPR_17
PPR_2
PPR_1
PPR_3
PPR
TPR_7
TPR_19
PPR_1
PPR_2
PPR_3
PPR
TPR_14
Ribonuc_red_lgN
TPR_8
PPR_long
PPR_2
PPR_1
PPR_3
PPR
Coatomer_E
AEP1
PPR_3
PPR_2
PPR_1
PPR
PPR_1
PPR_2
PPR_3
PPR
RPN7
PPR
PPR_1
AEP1
Ribonuc_red_lgN
PPR_3
PPR_2
PPR
PPR_1
RPN7
TPR_16
TPR_7
TPR_14
TPR_8
TPR_6
TPR_4
TPR_19
PPR_1
PPR_2
PPR
PPR_3
TPR_14
RPN7
TPR_6
PPR_3
PPR_2
PPR_1
PPR
PPR_long
PPR_1
PPR_2
PPR_3
Coatomer_E
RPN7
AEP1
PPR
NatB_MDM20
Toxin_YhaV
PPR_1
PPR_3
PPR_2
PPR
PPR_long
Toxin_YhaV
PPR_3
PPR_1
PPR
PPR_2
PPR_3
PPR_1
PPR_2
PPR
TPR_19
TPR_16
TPR_17
TPR_19
TPR_4
PPR

References:

AEP1

TPR_6

TPR_4

RPN7
15102831 Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae. J Biol Chem. 2004;279:27168-27176.

TPR_14

TPR_19

TPR_17

PPR_long

PPR_3

PPR_2

PPR_1

NatB_MDM20
12808144 Mdm20 protein functions with Nat3 protein to acetylate Tpm1 protein and regulate tropomyosin-actin interactions in budding yeast. Proc Natl Acad Sci U S A. 2003;100:7644-7649.

TPR_16

Toxin_YhaV
17706670 prlF and yhaV encode a new toxin-antitoxin system in Escherichia coli. J Mol Biol. 2007;372:894-905.

Coatomer_E
10469566 Segregation of COPI-rich and anterograde-cargo-rich domains in endoplasmic-reticulum-to-Golgi transport complexes. Curr Biol 1999;9:821-824.

Ribonuc_red_lgN
8052308 Structure of ribonucleotide reductase protein R1. Nature 1994;370:533-539.

PPR
7664742 The product of the nuclear gene PET309 is required for translation of mature mRNA and stability or production of intron-containing RNAs derived from the mitochondrial COX1 locus of Saccharomyces cerevisiae. EMBO J 1995;14:4031-4043.
8039510 A nuclear mutation in maize blocks the processing and translation of several chloroplast mRNAs and provides evidence for the differential translation of alternative mRNA forms. EMBO J 1994;13:3170-3181.
10664580 The PPR motif - a TPR-related motif prevalent in plant organellar proteins. Trends Biochem Sci 2000;25:45-47.

TPR_7

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
PPR_3	Pentatricopeptide repeat domain	0.038	5	25.00	66	106
PPR_2	PPR repeat family	7.5E-06	17	30.00	77	108
PPR_1	PPR repeat	0.00016	12	23.80	77	103
PPR	PPR repeat	6.5E-08	23	25.00	80	108
AEP1	ATPase expression protein 1	0.16	1	27.00	81	119
TPR_19	Tetratricopeptide repeat	0.5	1	25.00	87	106
TPR_4	Tetratricopeptide repeat	0.86	1	22.00	88	101
PPR_1	PPR repeat	2E-05	15	23.80	106	134
PPR_2	PPR repeat family	2.3E-11	34	30.00	106	137
PPR_3	Pentatricopeptide repeat domain	0.00047	11	25.00	107	138
PPR	PPR repeat	2.7E-09	27	25.00	109	136
Coatomer_E	Coatomer epsilon subunit	0.32	1	20.40	112	188
PPR_long	Pentacotripeptide-repeat region of PRORP	0.16	2	27.00	121	180
TPR_19	Tetratricopeptide repeat	0.17	3	25.00	133	168
TPR_17	Tetratricopeptide repeat	0.088	4	24.40	135	159
PPR_2	PPR repeat family	9.5E-12	35	30.00	136	169
PPR_1	PPR repeat	2.6E-09	27	23.80	137	164
PPR_3	Pentatricopeptide repeat domain	0.0071	7	25.00	137	167
PPR	PPR repeat	1.8E-10	31	25.00	139	169
TPR_7	Tetratricopeptide repeat	0.18	3	27.90	147	163
TPR_19	Tetratricopeptide repeat	0.0033	8	25.00	150	199
PPR_1	PPR repeat	7.8E-09	26	23.80	167	195
PPR_2	PPR repeat family	9.2E-10	29	30.00	167	199
PPR_3	Pentatricopeptide repeat domain	9.8E-05	13	25.00	168	207
PPR	PPR repeat	1.1E-09	29	25.00	170	199
TPR_14	Tetratricopeptide repeat	0.11	4	23.50	172	197
Ribonuc_red_lgN	Ribonucleotide reductase, all-alpha domain	0.16	2	22.80	180	201
TPR_8	Tetratricopeptide repeat	0.18	3	25.70	180	192
PPR_long	Pentacotripeptide-repeat region of PRORP	0.19	1	27.00	182	252
PPR_2	PPR repeat family	1.6E-09	28	30.00	198	231
PPR_1	PPR repeat	0.00047	10	23.80	198	226
PPR_3	Pentatricopeptide repeat domain	0.73	0	25.00	199	229
PPR	PPR repeat	1E-08	26	25.00	201	231
Coatomer_E	Coatomer epsilon subunit	0.72	-1	20.40	204	230
AEP1	ATPase expression protein 1	0.44	0	27.00	205	241
PPR_3	Pentatricopeptide repeat domain	0.011	6	25.00	229	261
PPR_2	PPR repeat family	2.1E-11	34	30.00	229	262
PPR_1	PPR repeat	5.6E-12	36	23.80	230	257
PPR	PPR repeat	5.7E-12	36	25.00	232	262
PPR_1	PPR repeat	0.00054	10	23.80	260	289
PPR_2	PPR repeat family	3.4E-10	30	30.00	260	301
PPR_3	Pentatricopeptide repeat domain	0.0034	8	25.00	261	298
PPR	PPR repeat	6.8E-10	29	25.00	263	290
RPN7	26S proteasome subunit RPN7	0.94	-1	25.30	337	367
PPR	PPR repeat	0.083	4	25.00	344	364
PPR_1	PPR repeat	0.19	2	23.80	344	364
AEP1	ATPase expression protein 1	0.01	5	27.00	364	412
Ribonuc_red_lgN	Ribonucleotide reductase, all-alpha domain	0.01	6	22.80	365	394
PPR_3	Pentatricopeptide repeat domain	0.00073	10	25.00	366	396
PPR_2	PPR repeat family	1.9E-05	15	30.00	370	393
PPR	PPR repeat	1.2E-06	19	25.00	370	396
PPR_1	PPR repeat	0.00051	10	23.80	372	393
RPN7	26S proteasome subunit RPN7	0.15	2	25.30	375	411
TPR_16	Tetratricopeptide repeat	0.028	6	32.70	376	394
TPR_7	Tetratricopeptide repeat	0.022	6	27.90	378	394
TPR_14	Tetratricopeptide repeat	0.045	5	23.50	378	397
TPR_8	Tetratricopeptide repeat	0.048	5	25.70	378	396
TPR_6	Tetratricopeptide repeat	0.088	4	26.30	378	396
TPR_4	Tetratricopeptide repeat	0.11	4	22.00	379	393
TPR_19	Tetratricopeptide repeat	0.09	4	25.00	379	425
PPR_1	PPR repeat	1.4E-05	15	23.80	399	425
PPR_2	PPR repeat family	6.4E-07	20	30.00	399	428
PPR	PPR repeat	1.8E-08	25	25.00	401	429
PPR_3	Pentatricopeptide repeat domain	0.25	2	25.00	401	428
TPR_14	Tetratricopeptide repeat	0.081	5	23.50	404	431
RPN7	26S proteasome subunit RPN7	0.23	2	25.30	407	429
TPR_6	Tetratricopeptide repeat	0.2	3	26.30	410	429
PPR_3	Pentatricopeptide repeat domain	0.015	6	25.00	430	476
PPR_2	PPR repeat family	1.1E-12	38	30.00	430	474
PPR_1	PPR repeat	0.00044	10	23.80	430	458
PPR	PPR repeat	4.6E-09	27	25.00	432	462
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0084	6	27.00	438	530
PPR_1	PPR repeat	2.3E-05	15	23.80	500	530
PPR_2	PPR repeat family	2.6E-05	15	30.00	501	532
PPR_3	Pentatricopeptide repeat domain	0.011	6	25.00	501	532
Coatomer_E	Coatomer epsilon subunit	0.0065	6	20.40	505	566
RPN7	26S proteasome subunit RPN7	0.0093	6	25.30	506	544
AEP1	ATPase expression protein 1	0.29	0	27.00	506	540
PPR	PPR repeat	1.3E-06	19	25.00	507	532
NatB_MDM20	N-acetyltransferase B complex (NatB) non catalytic subunit	0.00039	10	20.50	509	561
Toxin_YhaV	Toxin with endonuclease activity YhaV	0.0051	7	22.80	516	535
PPR_1	PPR repeat	1.2E-07	22	23.80	530	560
PPR_3	Pentatricopeptide repeat domain	0.00035	11	25.00	531	579
PPR_2	PPR repeat family	4.4E-15	46	30.00	532	580
PPR	PPR repeat	8.4E-12	35	25.00	535	564
PPR_long	Pentacotripeptide-repeat region of PRORP	0.0015	8	27.00	550	628
Toxin_YhaV	Toxin with endonuclease activity YhaV	0.1	3	22.80	551	571
PPR_3	Pentatricopeptide repeat domain	1.4E-05	16	25.00	556	616
PPR_1	PPR repeat	0.18	2	23.80	564	596
PPR	PPR repeat	8.8E-05	13	25.00	570	597
PPR_2	PPR repeat family	0.068	4	30.00	575	603
PPR_3	Pentatricopeptide repeat domain	0.02	5	25.00	600	648
PPR_1	PPR repeat	0.00029	11	23.80	605	627
PPR_2	PPR repeat family	0.046	4	30.00	607	628
PPR	PPR repeat	6.3E-05	14	25.00	608	628
TPR_19	Tetratricopeptide repeat	0.14	3	25.00	611	634
TPR_16	Tetratricopeptide repeat	0.53	2	32.70	660	692
TPR_17	Tetratricopeptide repeat	0.11	4	24.40	665	694
TPR_19	Tetratricopeptide repeat	0.69	1	25.00	666	692
TPR_4	Tetratricopeptide repeat	0.071	5	22.00	677	692
PPR	PPR repeat	0.39	2	25.00	683	706