c2pfam

AT1G04020.1 :

Domain Description Evalue Bits GA Start End
zf-HC5HC2H_2 PHD-zinc-finger like domain 0.063 4 27.00 14 62
zf-HC5HC2H PHD-like zinc-binding domain 0.043 5 29.10 16 61
zf-RING_6 zf-RING of BARD1-type protein 8.2E-10 29 35.00 17 63
zf-Nse Zinc-finger of the MIZ type in Nse subunit 0.0017 9 20.70 17 62
zf-rbx1 RING-H2 zinc finger domain 0.0063 7 31.00 22 63
zf-Di19 Drought induced 19 protein (Di19), zinc-binding 0.0068 7 27.50 23 72
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 2.1E-10 31 27.00 23 65
zf-RING_10 zinc RING finger of MSL2 6.2E-08 23 31.00 23 90
zf-RING_5 zinc-RING finger domain 9.4E-10 29 27.90 24 63
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 1.1E-10 32 27.00 24 62
zf-RING_2 Ring finger domain 2.9E-08 24 27.30 24 63
zf-C3HC4_4 zinc finger of C3HC4-type, RING 2.4E-09 28 30.00 25 62
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 5.5E-09 26 21.00 25 62
Prok-RING_4 Prokaryotic RING finger family 4 1.2E-07 22 27.00 25 65
zf-RING_UBOX RING-type zinc-finger 1.5E-09 28 25.20 25 60
zf-HC5HC2H_2 PHD-zinc-finger like domain 1.1E-08 26 27.00 368 431
zf-HC5HC2H PHD-like zinc-binding domain 1E-12 39 29.10 371 450
zf-rbx1 RING-H2 zinc finger domain 0.074 4 31.00 401 430
zf-RING_2 Ring finger domain 0.78 1 27.30 415 447
PTCB-BRCT twin BRCT domain 8.7E-06 16 21.40 490 533
BRCT BRCA1 C Terminus (BRCT) domain 3.9E-09 27 21.20 494 563
RTT107_BRCT_5 Regulator of Ty1 transposition protein 107 BRCT domain 0.0001 13 27.00 497 575
BRCT_2 BRCT domain, a BRCA1 C-terminus domain 8.9E-05 13 27.30 499 574
BRCT_2 BRCT domain, a BRCA1 C-terminus domain 2.1E-09 28 27.30 598 709
BRCT BRCA1 C Terminus (BRCT) domain 2.3E-05 15 21.20 598 703

713

zf-HC5HC2H_2
zf-HC5HC2H
zf-RING_6
zf-Nse
zf-rbx1
zf-Di19
zf-C3HC4_3
zf-RING_10
zf-RING_5
zf-C3HC4_2
zf-RING_2
zf-C3HC4_4
zf-C3HC4
Prok-RING_4
zf-RING_UBOX
zf-HC5HC2H_2
zf-HC5HC2H
zf-rbx1
zf-RING_2
PTCB-BRCT
BRCT
RTT107_BRCT_5
BRCT_2
BRCT_2
BRCT

References:

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

RTT107_BRCT_5

zf-HC5HC2H_2

zf-HC5HC2H

zf-Di19

PTCB-BRCT

Prok-RING_4

zf-C3HC4_2

BRCT_2

zf-RING_6

zf-RING_5

zf-RING_2

zf-rbx1

zf-RING_10

zf-C3HC4_3

zf-C3HC4_4

zf-RING_UBOX

zf-Nse
12966087 Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex. J Biol Chem 2003;278:45460-45467.

BRCT
8673121 BRCA1 protein products ...Functional motifs... Nature Genet 1996;13:266-268.
15501676 Interactions between BRCT repeats and phosphoproteins: tangled up in two. Trends Biochem Sci. 2004;29:579-585.
11573086 Crystal structure of the BRCT repeat region from the breast cancer-associated protein BRCA1. Nat Struct Biol. 2001;8:838-842.
15133503 Structural basis of phosphopeptide recognition by the BRCT domain of BRCA1. Nat Struct Mol Biol. 2004;11:519-525.
14534301 Detection of protein folding defects caused by BRCA1-BRCT truncation and missense mutations. J Biol Chem. 2003;278:53007-53016.

Domain	Description	Evalue	Bits	GA	Start	End
zf-HC5HC2H_2	PHD-zinc-finger like domain	0.063	4	27.00	14	62
zf-HC5HC2H	PHD-like zinc-binding domain	0.043	5	29.10	16	61
zf-RING_6	zf-RING of BARD1-type protein	8.2E-10	29	35.00	17	63
zf-Nse	Zinc-finger of the MIZ type in Nse subunit	0.0017	9	20.70	17	62
zf-rbx1	RING-H2 zinc finger domain	0.0063	7	31.00	22	63
zf-Di19	Drought induced 19 protein (Di19), zinc-binding	0.0068	7	27.50	23	72
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	2.1E-10	31	27.00	23	65
zf-RING_10	zinc RING finger of MSL2	6.2E-08	23	31.00	23	90
zf-RING_5	zinc-RING finger domain	9.4E-10	29	27.90	24	63
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	1.1E-10	32	27.00	24	62
zf-RING_2	Ring finger domain	2.9E-08	24	27.30	24	63
zf-C3HC4_4	zinc finger of C3HC4-type, RING	2.4E-09	28	30.00	25	62
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	5.5E-09	26	21.00	25	62
Prok-RING_4	Prokaryotic RING finger family 4	1.2E-07	22	27.00	25	65
zf-RING_UBOX	RING-type zinc-finger	1.5E-09	28	25.20	25	60
zf-HC5HC2H_2	PHD-zinc-finger like domain	1.1E-08	26	27.00	368	431
zf-HC5HC2H	PHD-like zinc-binding domain	1E-12	39	29.10	371	450
zf-rbx1	RING-H2 zinc finger domain	0.074	4	31.00	401	430
zf-RING_2	Ring finger domain	0.78	1	27.30	415	447
PTCB-BRCT	twin BRCT domain	8.7E-06	16	21.40	490	533
BRCT	BRCA1 C Terminus (BRCT) domain	3.9E-09	27	21.20	494	563
RTT107_BRCT_5	Regulator of Ty1 transposition protein 107 BRCT domain	0.0001	13	27.00	497	575
BRCT_2	BRCT domain, a BRCA1 C-terminus domain	8.9E-05	13	27.30	499	574
BRCT_2	BRCT domain, a BRCA1 C-terminus domain	2.1E-09	28	27.30	598	709
BRCT	BRCA1 C Terminus (BRCT) domain	2.3E-05	15	21.20	598	703