c2pfam

AT1G04120.1 :

Domain Description Evalue Bits GA Start End
ABC_membrane ABC transporter transmembrane region 1.3E-31 101 22.00 312 576
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 0.018 5 23.10 635 671
ABC_tran ABC transporter 1E-21 69 23.10 640 774
AAA_29 P-loop containing region of AAA domain 0.0029 8 27.00 643 667
AAA_7 P-loop containing dynein motor region 0.018 6 25.80 644 675
RsgA_GTPase RsgA GTPase 0.011 7 30.00 644 681
IIGP Interferon-inducible GTPase (IIGP) 0.0018 8 19.60 646 669
DEAD DEAD/DEAH box helicase 0.65 1 20.60 649 668
AAA_24 AAA domain 0.09 3 27.00 650 670
TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain 0.015 5 19.90 650 688
DUF815 Protein of unknown function (DUF815) 0.17 2 20.10 651 674
NB-ARC NB-ARC domain 0.51 0 23.50 651 679
DUF87 Domain of unknown function DUF87 0.0034 8 20.90 651 675
FtsK_SpoIIIE FtsK/SpoIIIE family 0.017 5 21.20 652 668
MMR_HSR1 GTPase of unknown function 0.0011 10 24.50 652 679
Dynamin_N Dynamin family 0.00016 13 21.00 653 674
SMC_N RecF/RecN/SMC N terminal domain 0.029 5 40.00 653 671
T2SSE Type II/IV secretion system protein 0.018 5 24.90 653 680
AAA_16 AAA ATPase domain 0.13 4 32.60 653 677
AAA_18 AAA domain 0.12 4 29.40 653 667
AAA_22 AAA domain 0.17 3 27.00 653 667
cobW CobW/HypB/UreG, nucleotide-binding domain 0.16 2 20.70 654 671
AAA_15 AAA ATPase domain 0.75 0 32.10 654 670
ATP_bind_1 Conserved hypothetical ATP binding protein 0.033 5 20.20 655 670
SMC_N RecF/RecN/SMC N terminal domain 0.00012 13 40.00 705 815
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 0.042 5 27.00 747 808
Ploopntkinase3 P-loop Nucleotide Kinase3 0.076 4 27.00 910 946
ABC_membrane ABC transporter transmembrane region 8.9E-32 102 22.00 951 1193
ABC_tran ABC transporter 2.7E-34 110 23.10 1285 1433
DEAD DEAD/DEAH box helicase 0.13 3 20.60 1294 1312
AAA_24 AAA domain 0.0044 8 27.00 1295 1445
AAA_7 P-loop containing dynein motor region 0.0056 7 25.80 1295 1321
MeaB Methylmalonyl Co-A mutase-associated GTPase MeaB 0.0003 11 23.10 1296 1332
DUF87 Domain of unknown function DUF87 8.6E-05 14 20.90 1296 1318
RsgA_GTPase RsgA GTPase 0.003 8 30.00 1297 1317
MMR_HSR1 GTPase of unknown function 7.6E-06 17 24.50 1297 1317
AAA_29 P-loop containing region of AAA domain 1.3E-06 19 27.00 1297 1323
IIGP Interferon-inducible GTPase (IIGP) 0.043 4 19.60 1297 1315
TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain 0.0077 6 19.90 1297 1323
AAA_18 AAA domain 0.0035 9 29.40 1298 1318
AAA_23 AAA domain 5.8E-05 15 27.00 1298 1315
Ploopntkinase3 P-loop Nucleotide Kinase3 0.03 5 27.00 1298 1317
cobW CobW/HypB/UreG, nucleotide-binding domain 0.0089 7 20.70 1298 1316
NB-ARC NB-ARC domain 0.0017 9 23.50 1298 1317
Dynamin_N Dynamin family 0.0065 8 21.00 1298 1316
T2SSE Type II/IV secretion system protein 0.0013 9 24.90 1298 1327
AAA_21 AAA domain, putative AbiEii toxin, Type IV TA system 4.8E-06 17 27.00 1299 1377
SMC_N RecF/RecN/SMC N terminal domain 0.0014 9 40.00 1299 1319
AAA_16 AAA ATPase domain 6.4E-05 14 32.60 1300 1445
ATP_bind_1 Conserved hypothetical ATP binding protein 0.002 9 20.20 1300 1332
FtsK_SpoIIIE FtsK/SpoIIIE family 0.001 9 21.20 1300 1315
AAA_30 AAA domain 0.0045 8 27.00 1300 1326
AAA_15 AAA ATPase domain 0.004 8 32.10 1300 1335
DUF815 Protein of unknown function (DUF815) 0.0056 7 20.10 1300 1345
AAA_22 AAA domain 0.00056 11 27.00 1300 1320
Viral_helicase1 Viral (Superfamily 1) RNA helicase 0.0037 8 20.90 1302 1318
SMC_N RecF/RecN/SMC N terminal domain 0.001 9 40.00 1404 1470
DEAD DEAD/DEAH box helicase 0.0069 7 20.60 1412 1449

1514

ABC_membrane
MeaB
ABC_tran
AAA_29
AAA_7
RsgA_GTPase
IIGP
DEAD
AAA_24
TrwB_AAD_bind
DUF815
NB-ARC
DUF87
FtsK_SpoIIIE
MMR_HSR1
Dynamin_N
SMC_N
T2SSE
AAA_16
AAA_18
AAA_22
cobW
AAA_15
ATP_bind_1
SMC_N
AAA_21
Ploopntkinase3
ABC_membrane
ABC_tran
DEAD
AAA_24
AAA_7
MeaB
DUF87
RsgA_GTPase
MMR_HSR1
AAA_29
IIGP
TrwB_AAD_bind
AAA_18
AAA_23
Ploopntkinase3
cobW
NB-ARC
Dynamin_N
T2SSE
AAA_21
SMC_N
AAA_16
ATP_bind_1
FtsK_SpoIIIE
AAA_30
AAA_15
DUF815
AAA_22
Viral_helicase1
SMC_N
DEAD

References:

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

TrwB_AAD_bind
11214325 The bacterial conjugation protein TrwB resembles ring helicases and F1-ATPase. Nature. 2001;409:637-641.
11748238 Conjugative plasmid protein TrwB, an integral membrane type IV secretion system coupling protein. Detailed structural features and mapping of the active site cleft. J Biol Chem. 2002;277:7556-7566.

RsgA_GTPase

FtsK_SpoIIIE
7592387 A new Escherichia coli cell division gene, ftsK. J Bacteriol 1995;177:6211-6222.
8160014 Bacillus subtilis spoIIIE protein required for DNA segregation during asymmetric cell division. Science 1994;264:572-575.

ATP_bind_1

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

IIGP
11907101 The IFN-inducible Golgi- and endoplasmic reticulum- associated 47-kDa GTPase IIGP is transiently expressed during listeriosis. J Immunol 2002;168:3428-3436.

AAA_30

MeaB

DUF815

AAA_23

AAA_7

Viral_helicase1
8269709 Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 1993;28:375-430.
10217401 RNA helicase activity of Semliki Forest virus replicase protein NSP2. FEBS Lett 1999;448:19-22.
8057461 ATPase and GTPase activities associated with Semliki Forest virus nonstructural protein nsP2. J Virol 1994;68:5804-5810.
10982322 Helicase and capping enzyme active site mutations in brome mosaic virus protein 1a cause defects in template recruitment, negative-strand RNA synthesis, and viral RNA capping. J Virol 2000;74:8803-8811.

Ploopntkinase3

Dynamin_N
8939066 Dynamin GTPase, a force-generating molecular switch. Bioessays 1996;18:885-893.
2144893 Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins. Nature 1990;347:256-261.

AAA_29

ABC_membrane

AAA_24

T2SSE

AAA_22

AAA_21

AAA_18

AAA_16

AAA_15

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

cobW
9140970 The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase. Mol Microbiol 1997;24:119-128.
9209019 Characterization of UreG, identification of a UreD-UreF-UreG complex, and evidence suggesting that a nucleotide-binding site in UreG is required for in vivo metallocenter assembly of Klebsiella aerogenes urease. J Bacteriol 1997;179:4081-4086.
8423137 The product of the hypB gene, which is required for nickel incorporation into hydrogenases, is a novel guanine nucleotide-binding protein. J Bacteriol 1993;175:630-635.
1624427 Klebsiella aerogenes urease gene cluster: sequence of ureD and demonstration that four accessory genes (ureD, ureE, ureF, and ureG) are involved in nickel metallocenter biosynthesis. J Bacteriol 1992;174:4324-4330.
1655697 Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cob J Bacteriol 1991;173:6074-6087.

NB-ARC
9545207 The NB-ARC domain: a novel signalling motif shared by plant resistance gene products and regulators of cell death in animals. Curr Biol 1998;8:226-227.

SMC_N
10429180 Structural maintenance of chromosomes (SMC) proteins: conserved molecular properties for multiple biological functions. Eur J Biochem 1999;263:6-13.
9640531 SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998;10:317-322.

DUF87

Domain	Description	Evalue	Bits	GA	Start	End
ABC_membrane	ABC transporter transmembrane region	1.3E-31	101	22.00	312	576
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	0.018	5	23.10	635	671
ABC_tran	ABC transporter	1E-21	69	23.10	640	774
AAA_29	P-loop containing region of AAA domain	0.0029	8	27.00	643	667
AAA_7	P-loop containing dynein motor region	0.018	6	25.80	644	675
RsgA_GTPase	RsgA GTPase	0.011	7	30.00	644	681
IIGP	Interferon-inducible GTPase (IIGP)	0.0018	8	19.60	646	669
DEAD	DEAD/DEAH box helicase	0.65	1	20.60	649	668
AAA_24	AAA domain	0.09	3	27.00	650	670
TrwB_AAD_bind	Type IV secretion-system coupling protein DNA-binding domain	0.015	5	19.90	650	688
DUF815	Protein of unknown function (DUF815)	0.17	2	20.10	651	674
NB-ARC	NB-ARC domain	0.51	0	23.50	651	679
DUF87	Domain of unknown function DUF87	0.0034	8	20.90	651	675
FtsK_SpoIIIE	FtsK/SpoIIIE family	0.017	5	21.20	652	668
MMR_HSR1	GTPase of unknown function	0.0011	10	24.50	652	679
Dynamin_N	Dynamin family	0.00016	13	21.00	653	674
SMC_N	RecF/RecN/SMC N terminal domain	0.029	5	40.00	653	671
T2SSE	Type II/IV secretion system protein	0.018	5	24.90	653	680
AAA_16	AAA ATPase domain	0.13	4	32.60	653	677
AAA_18	AAA domain	0.12	4	29.40	653	667
AAA_22	AAA domain	0.17	3	27.00	653	667
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.16	2	20.70	654	671
AAA_15	AAA ATPase domain	0.75	0	32.10	654	670
ATP_bind_1	Conserved hypothetical ATP binding protein	0.033	5	20.20	655	670
SMC_N	RecF/RecN/SMC N terminal domain	0.00012	13	40.00	705	815
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	0.042	5	27.00	747	808
Ploopntkinase3	P-loop Nucleotide Kinase3	0.076	4	27.00	910	946
ABC_membrane	ABC transporter transmembrane region	8.9E-32	102	22.00	951	1193
ABC_tran	ABC transporter	2.7E-34	110	23.10	1285	1433
DEAD	DEAD/DEAH box helicase	0.13	3	20.60	1294	1312
AAA_24	AAA domain	0.0044	8	27.00	1295	1445
AAA_7	P-loop containing dynein motor region	0.0056	7	25.80	1295	1321
MeaB	Methylmalonyl Co-A mutase-associated GTPase MeaB	0.0003	11	23.10	1296	1332
DUF87	Domain of unknown function DUF87	8.6E-05	14	20.90	1296	1318
RsgA_GTPase	RsgA GTPase	0.003	8	30.00	1297	1317
MMR_HSR1	GTPase of unknown function	7.6E-06	17	24.50	1297	1317
AAA_29	P-loop containing region of AAA domain	1.3E-06	19	27.00	1297	1323
IIGP	Interferon-inducible GTPase (IIGP)	0.043	4	19.60	1297	1315
TrwB_AAD_bind	Type IV secretion-system coupling protein DNA-binding domain	0.0077	6	19.90	1297	1323
AAA_18	AAA domain	0.0035	9	29.40	1298	1318
AAA_23	AAA domain	5.8E-05	15	27.00	1298	1315
Ploopntkinase3	P-loop Nucleotide Kinase3	0.03	5	27.00	1298	1317
cobW	CobW/HypB/UreG, nucleotide-binding domain	0.0089	7	20.70	1298	1316
NB-ARC	NB-ARC domain	0.0017	9	23.50	1298	1317
Dynamin_N	Dynamin family	0.0065	8	21.00	1298	1316
T2SSE	Type II/IV secretion system protein	0.0013	9	24.90	1298	1327
AAA_21	AAA domain, putative AbiEii toxin, Type IV TA system	4.8E-06	17	27.00	1299	1377
SMC_N	RecF/RecN/SMC N terminal domain	0.0014	9	40.00	1299	1319
AAA_16	AAA ATPase domain	6.4E-05	14	32.60	1300	1445
ATP_bind_1	Conserved hypothetical ATP binding protein	0.002	9	20.20	1300	1332
FtsK_SpoIIIE	FtsK/SpoIIIE family	0.001	9	21.20	1300	1315
AAA_30	AAA domain	0.0045	8	27.00	1300	1326
AAA_15	AAA ATPase domain	0.004	8	32.10	1300	1335
DUF815	Protein of unknown function (DUF815)	0.0056	7	20.10	1300	1345
AAA_22	AAA domain	0.00056	11	27.00	1300	1320
Viral_helicase1	Viral (Superfamily 1) RNA helicase	0.0037	8	20.90	1302	1318
SMC_N	RecF/RecN/SMC N terminal domain	0.001	9	40.00	1404	1470
DEAD	DEAD/DEAH box helicase	0.0069	7	20.60	1412	1449