c2pfam

AT1G33950.1 :

Domain Description Evalue Bits GA Start End
FtsK_SpoIIIE FtsK/SpoIIIE family 4.7E-05 13 21.20 14 42
AAA_7 P-loop containing dynein motor region 0.00017 11 25.80 14 58
AAA_22 AAA domain 0.0012 9 27.00 14 56
ABC_tran ABC transporter 0.00052 11 23.10 14 39
RsgA_GTPase RsgA GTPase 1.9E-05 15 30.00 16 80
AIG1 AIG1 family 0 278 20.30 18 231
MMR_HSR1 GTPase of unknown function 1.2E-13 41 24.50 18 126
FeoB_N Ferrous iron transport protein B 7.6E-10 28 21.20 18 111
Septin Septin 1.4E-06 18 20.00 18 78
Dynamin_N Dynamin family 0.00027 11 21.00 19 45
Gtr1_RagA Gtr1/RagA G protein conserved region 9.2E-05 12 20.10 19 78
Roc Ras of Complex, Roc, domain of DAPkinase 6.8E-05 13 27.00 19 75
GTP_EFTU Elongation factor Tu GTP binding domain 0.00078 9 20.20 45 99
Dynamin_N Dynamin family 0.0006 10 21.00 57 124
RsgA_GTPase RsgA GTPase 0.095 3 30.00 85 154
Exonuc_VII_L Exonuclease VII, large subunit 6.6E-05 12 21.70 207 292
AAA_22 AAA domain 0.73 0 27.00 236 276

311

FtsK_SpoIIIE
AAA_7
AAA_22
ABC_tran
RsgA_GTPase
AIG1
MMR_HSR1
FeoB_N
Septin
Dynamin_N
Gtr1_RagA
Roc
GTP_EFTU
Dynamin_N
RsgA_GTPase
Exonuc_VII_L
AAA_22

References:

GTP_EFTU
9311785 Visualization of elongation factor Tu on the Escherichia coli ribosome. Nature 1997;389:403-406.

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

Septin
12665577 Molecular dissection of a yeast septin: distinct domains are required for septin interaction, localization, and function. Mol Cell Biol 2003;23:2762-2777.
14611653 The septins. Genome Biol 2003;4:236.

Dynamin_N
8939066 Dynamin GTPase, a force-generating molecular switch. Bioessays 1996;18:885-893.
2144893 Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins. Nature 1990;347:256-261.

RsgA_GTPase

FtsK_SpoIIIE
7592387 A new Escherichia coli cell division gene, ftsK. J Bacteriol 1995;177:6211-6222.
8160014 Bacillus subtilis spoIIIE protein required for DNA segregation during asymmetric cell division. Science 1994;264:572-575.

Exonuc_VII_L
6284744 Subunit structure of Escherichia coli exonuclease VII. J Biol Chem 1982;257:8799-8805.

AAA_7

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

FeoB_N
8407793 Characterization of the ferrous iron uptake system of Escherichia coli. J Bacteriol 1993;175:6212-6219.

Roc

AIG1
8742710 Isolation of Arabidopsis genes that differentiate between resistance responses mediated by the RPS2 and RPM1 disease resistance genes. Plant Cell 1996;8:241-249.

AAA_22

Gtr1_RagA
1620108 Putative GTP-binding protein, Gtr1, associated with the function of the Pho84 inorganic phosphate transporter in Saccharomyces cerevisiae. Mol Cell Biol 1992;12:2958-2966.
7499430 Cloning of a novel family of mammalian GTP-binding proteins (RagA, RagBs, RagB1) with remote similarity to the Ras-related GTPases. J Biol Chem 1995;270:28982-28988.
10388807 Saccharomyces cerevisiae putative G protein, Gtr1p, which forms complexes with itself and a novel protein designated as Gtr2p, negatively regulates the Ran/Gsp1p G protein cycle through Gtr2p. Genetics 1999;152:853-867.
11073942 Novel G proteins, Rag C and Rag D, interact with GTP-binding proteins, Rag A and Rag B. J Biol Chem 2001;276:7246-7257.

Domain	Description	Evalue	Bits	GA	Start	End
FtsK_SpoIIIE	FtsK/SpoIIIE family	4.7E-05	13	21.20	14	42
AAA_7	P-loop containing dynein motor region	0.00017	11	25.80	14	58
AAA_22	AAA domain	0.0012	9	27.00	14	56
ABC_tran	ABC transporter	0.00052	11	23.10	14	39
RsgA_GTPase	RsgA GTPase	1.9E-05	15	30.00	16	80
AIG1	AIG1 family	0	278	20.30	18	231
MMR_HSR1	GTPase of unknown function	1.2E-13	41	24.50	18	126
FeoB_N	Ferrous iron transport protein B	7.6E-10	28	21.20	18	111
Septin	Septin	1.4E-06	18	20.00	18	78
Dynamin_N	Dynamin family	0.00027	11	21.00	19	45
Gtr1_RagA	Gtr1/RagA G protein conserved region	9.2E-05	12	20.10	19	78
Roc	Ras of Complex, Roc, domain of DAPkinase	6.8E-05	13	27.00	19	75
GTP_EFTU	Elongation factor Tu GTP binding domain	0.00078	9	20.20	45	99
Dynamin_N	Dynamin family	0.0006	10	21.00	57	124
RsgA_GTPase	RsgA GTPase	0.095	3	30.00	85	154
Exonuc_VII_L	Exonuclease VII, large subunit	6.6E-05	12	21.70	207	292
AAA_22	AAA domain	0.73	0	27.00	236	276