c2pfam

AT1G33970.1 :

Domain Description Evalue Bits GA Start End
ABC_tran ABC transporter 1 0 23.10 22 49
RsgA_GTPase RsgA GTPase 1E-05 16 30.00 24 87
AAA_22 AAA domain 0.0051 7 27.00 24 49
AIG1 AIG1 family 0 284 20.30 25 238
FeoB_N Ferrous iron transport protein B 1.2E-06 18 21.20 26 158
Roc Ras of Complex, Roc, domain of DAPkinase 0.00028 11 27.00 27 83
MMR_HSR1 GTPase of unknown function 7E-13 39 24.50 27 147
Dynamin_N Dynamin family 0.0019 9 21.00 27 53
Dynamin_N Dynamin family 0.02 5 21.00 59 99
RsgA_GTPase RsgA GTPase 0.036 4 30.00 109 167
COesterase Carboxylesterase 0.0029 7 19.40 190 318
Jnk-SapK_ap_N JNK_SAPK-associated protein-1 1 0 24.10 191 269
MetOD2 Metanogen output domain 2 0.0017 9 30.60 194 245
Phage_GPO Phage capsid scaffolding protein (GPO) serine peptidase 0.0027 8 21.10 216 337
LMBR1 LMBR1-like membrane protein 0.0049 6 24.20 222 338
Exonuc_VII_L Exonuclease VII, large subunit 0.00025 11 21.70 226 332
Helicase_IV_N DNA helicase IV / RNA helicase N terminal 0.00017 12 24.50 237 332
DUF4407 Domain of unknown function (DUF4407) 0.0073 6 31.30 242 334
DUF2407_C DUF2407 C-terminal domain 0.0017 9 25.00 246 320
Uds1 Up-regulated During Septation 0.00055 10 27.00 249 336
MetOD2 Metanogen output domain 2 0.96 0 30.60 249 276
AAA_22 AAA domain 0.055 4 27.00 253 307
Jnk-SapK_ap_N JNK_SAPK-associated protein-1 4.8E-05 14 24.10 275 336
MetOD2 Metanogen output domain 2 0.0047 7 30.60 303 338

342

ABC_tran
RsgA_GTPase
AAA_22
AIG1
FeoB_N
Roc
MMR_HSR1
Dynamin_N
Dynamin_N
RsgA_GTPase
COesterase
Jnk-SapK_ap_N
MetOD2
Phage_GPO
LMBR1
Exonuc_VII_L
Helicase_IV_N
DUF4407
DUF2407_C
Uds1
MetOD2
AAA_22
Jnk-SapK_ap_N
MetOD2

References:

COesterase

MetOD2

ABC_tran
1864505 Homology between proteins controlling Streptomyces fradiae tylosin resistance and ATP-binding transport. Gene 1991;102:27-32.
1977073 Structure and function of haemolysin B,P-glycoprotein and other members of a novel family of membrane translocators. Mol Microbiol 1990;4:873-880.
2229036 Binding protein-dependent transport systems. J Bioenerg Biomembr 1990;22:571-592.
9872322 Crystal structure of the ATP-binding subunit of an ABC transporter. Nature 1998;396:703-707.

Uds1

RsgA_GTPase

DUF4407

Helicase_IV_N

MMR_HSR1
8180467 Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region. Mamm Genome 1994;5:100-105.

LMBR1
12032320 Disruption of a long-range cis-acting regulator for Shh causes preaxial polydactyly. Proc Natl Acad Sci U S A 2002;99:7548-7553.
11287427 Molecular cloning of a novel lipocalin-1 interacting human cell membrane receptor using phage display. J Biol Chem 2001;276:20206-20212.
11090342 Acheiropodia is caused by a genomic deletion in C7orf2, the human orthologue of the Lmbr1 gene. Am J Hum Genet 2001;68:38-45.

Exonuc_VII_L
6284744 Subunit structure of Escherichia coli exonuclease VII. J Biol Chem 1982;257:8799-8805.

Dynamin_N
8939066 Dynamin GTPase, a force-generating molecular switch. Bioessays 1996;18:885-893.
2144893 Molecular cloning of the microtubule-associated mechanochemical enzyme dynamin reveals homology with a new family of GTP-binding proteins. Nature 1990;347:256-261.

Phage_GPO
1837355 Nucleotide sequence of the DNA packaging and capsid synthesis genes of bacteriophage P2. Nucleic Acids Res 1991;19:7207-7214.
19064277 Functional domains of the bacteriophage P2 scaffolding protein: Identification of residues involved in assembly and protease activity. 2008; [Epub ahead of print]

FeoB_N
8407793 Characterization of the ferrous iron uptake system of Escherichia coli. J Bacteriol 1993;175:6212-6219.

DUF2407_C

Roc

AIG1
8742710 Isolation of Arabidopsis genes that differentiate between resistance responses mediated by the RPS2 and RPM1 disease resistance genes. Plant Cell 1996;8:241-249.

AAA_22

Jnk-SapK_ap_N

Domain	Description	Evalue	Bits	GA	Start	End
ABC_tran	ABC transporter	1	0	23.10	22	49
RsgA_GTPase	RsgA GTPase	1E-05	16	30.00	24	87
AAA_22	AAA domain	0.0051	7	27.00	24	49
AIG1	AIG1 family	0	284	20.30	25	238
FeoB_N	Ferrous iron transport protein B	1.2E-06	18	21.20	26	158
Roc	Ras of Complex, Roc, domain of DAPkinase	0.00028	11	27.00	27	83
MMR_HSR1	GTPase of unknown function	7E-13	39	24.50	27	147
Dynamin_N	Dynamin family	0.0019	9	21.00	27	53
Dynamin_N	Dynamin family	0.02	5	21.00	59	99
RsgA_GTPase	RsgA GTPase	0.036	4	30.00	109	167
COesterase	Carboxylesterase	0.0029	7	19.40	190	318
Jnk-SapK_ap_N	JNK_SAPK-associated protein-1	1	0	24.10	191	269
MetOD2	Metanogen output domain 2	0.0017	9	30.60	194	245
Phage_GPO	Phage capsid scaffolding protein (GPO) serine peptidase	0.0027	8	21.10	216	337
LMBR1	LMBR1-like membrane protein	0.0049	6	24.20	222	338
Exonuc_VII_L	Exonuclease VII, large subunit	0.00025	11	21.70	226	332
Helicase_IV_N	DNA helicase IV / RNA helicase N terminal	0.00017	12	24.50	237	332
DUF4407	Domain of unknown function (DUF4407)	0.0073	6	31.30	242	334
DUF2407_C	DUF2407 C-terminal domain	0.0017	9	25.00	246	320
Uds1	Up-regulated During Septation	0.00055	10	27.00	249	336
MetOD2	Metanogen output domain 2	0.96	0	30.60	249	276
AAA_22	AAA domain	0.055	4	27.00	253	307
Jnk-SapK_ap_N	JNK_SAPK-associated protein-1	4.8E-05	14	24.10	275	336
MetOD2	Metanogen output domain 2	0.0047	7	30.60	303	338