c2pfam

AT1G04190.1 :

Domain Description Evalue Bits GA Start End
TPR_1 Tetratricopeptide repeat 5E-09 26 20.40 16 48
TPR_2 Tetratricopeptide repeat 1E-07 22 22.40 18 48
TPR_12 Tetratricopeptide repeat 0.013 6 30.10 18 45
TPR_16 Tetratricopeptide repeat 2.6E-09 28 32.70 21 74
TPR_8 Tetratricopeptide repeat 0.00014 12 25.70 21 48
TPR_11 TPR repeat 8.4E-13 38 26.80 22 61
TPR_14 Tetratricopeptide repeat 0.00033 12 23.50 24 52
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.058 4 27.20 24 75
TPR_6 Tetratricopeptide repeat 0.029 5 26.30 25 47
TPR_7 Tetratricopeptide repeat 0.00089 10 27.90 26 49
TPR_19 Tetratricopeptide repeat 5E-05 14 25.00 26 69
MIT MIT (microtubule interacting and transport) domain 0.05 4 28.30 27 44
TPR_9 Tetratricopeptide repeat 0.00021 12 35.00 29 81
PPTA Protein prenyltransferase alpha subunit repeat 0.0032 8 20.20 34 58
TPR_17 Tetratricopeptide repeat 2.1E-06 18 24.40 37 60
ANAPC3 Anaphase-promoting complex, cyclosome, subunit 3 0.0017 9 27.20 40 107
TPR_2 Tetratricopeptide repeat 0.0046 7 22.40 50 81
TPR_1 Tetratricopeptide repeat 7.2E-06 16 20.40 50 81
TPR_9 Tetratricopeptide repeat 0.00014 12 35.00 66 119
TPR_17 Tetratricopeptide repeat 0.013 6 24.40 73 103
TPR_1 Tetratricopeptide repeat 3.7E-10 30 20.40 84 115
TPR_2 Tetratricopeptide repeat 8.8E-09 25 22.40 84 115
TPR_8 Tetratricopeptide repeat 4E-06 17 25.70 85 115
TPR_6 Tetratricopeptide repeat 0.0003 12 26.30 86 116
TPR_16 Tetratricopeptide repeat 0.00098 10 32.70 89 115
MIT MIT (microtubule interacting and transport) domain 1.2E-05 15 28.30 90 141
TPR_7 Tetratricopeptide repeat 0.015 6 27.90 90 114
TPR_12 Tetratricopeptide repeat 0.00094 10 30.10 90 111
TPR_14 Tetratricopeptide repeat 0.0011 10 23.50 92 119
TPR_19 Tetratricopeptide repeat 2E-05 15 25.00 95 133
TPR_11 TPR repeat 0.00017 11 26.80 97 118
PPTA Protein prenyltransferase alpha subunit repeat 0.3 1 20.20 99 116

328

TPR_1
TPR_2
TPR_12
TPR_16
TPR_8
TPR_11
TPR_14
ANAPC3
TPR_6
TPR_7
TPR_19
MIT
TPR_9
PPTA
TPR_17
ANAPC3
TPR_2
TPR_1
TPR_9
TPR_17
TPR_1
TPR_2
TPR_8
TPR_6
TPR_16
MIT
TPR_7
TPR_12
TPR_14
TPR_19
TPR_11
PPTA

References:

TPR_7

TPR_6

TPR_2
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_1
7667876 Tetratrico peptide repeat interactions: to TPR or not to TPR? Trends Biochem Sci 1995;20:257-259.
9482716 The structure of the tetratricopeptide repeats of protein phosphatase 5: implications for TPR-mediated protein-protein interactions. EMBO J 1998;17:1192-1199.

TPR_19

MIT
11085978 Identification and characterization of SNX15, a novel sorting nexin involved in protein trafficking. J Biol Chem 2001;276:5074-5084.
16193069 Structural and mechanistic studies of VPS4 proteins. EMBO J. 2005;24:3658-3669.
16174732 Structure and ESCRT-III protein interactions of the MIT domain of human VPS4A. Proc Natl Acad Sci U S A. 2005;102:13813-13818.

TPR_17

TPR_16

TPR_14

TPR_12

TPR_11

ANAPC3

PPTA
9843427 Crystal structure of farnesyl protein transferase complexed with a CaaX peptide and farnesyl diphosphate analogue. Biochemistry 1998;37:16601-16611.
12702202 Protein prenyltransferases. Genome Biol 2003;4:212.

TPR_9

TPR_8

Domain	Description	Evalue	Bits	GA	Start	End
TPR_1	Tetratricopeptide repeat	5E-09	26	20.40	16	48
TPR_2	Tetratricopeptide repeat	1E-07	22	22.40	18	48
TPR_12	Tetratricopeptide repeat	0.013	6	30.10	18	45
TPR_16	Tetratricopeptide repeat	2.6E-09	28	32.70	21	74
TPR_8	Tetratricopeptide repeat	0.00014	12	25.70	21	48
TPR_11	TPR repeat	8.4E-13	38	26.80	22	61
TPR_14	Tetratricopeptide repeat	0.00033	12	23.50	24	52
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.058	4	27.20	24	75
TPR_6	Tetratricopeptide repeat	0.029	5	26.30	25	47
TPR_7	Tetratricopeptide repeat	0.00089	10	27.90	26	49
TPR_19	Tetratricopeptide repeat	5E-05	14	25.00	26	69
MIT	MIT (microtubule interacting and transport) domain	0.05	4	28.30	27	44
TPR_9	Tetratricopeptide repeat	0.00021	12	35.00	29	81
PPTA	Protein prenyltransferase alpha subunit repeat	0.0032	8	20.20	34	58
TPR_17	Tetratricopeptide repeat	2.1E-06	18	24.40	37	60
ANAPC3	Anaphase-promoting complex, cyclosome, subunit 3	0.0017	9	27.20	40	107
TPR_2	Tetratricopeptide repeat	0.0046	7	22.40	50	81
TPR_1	Tetratricopeptide repeat	7.2E-06	16	20.40	50	81
TPR_9	Tetratricopeptide repeat	0.00014	12	35.00	66	119
TPR_17	Tetratricopeptide repeat	0.013	6	24.40	73	103
TPR_1	Tetratricopeptide repeat	3.7E-10	30	20.40	84	115
TPR_2	Tetratricopeptide repeat	8.8E-09	25	22.40	84	115
TPR_8	Tetratricopeptide repeat	4E-06	17	25.70	85	115
TPR_6	Tetratricopeptide repeat	0.0003	12	26.30	86	116
TPR_16	Tetratricopeptide repeat	0.00098	10	32.70	89	115
MIT	MIT (microtubule interacting and transport) domain	1.2E-05	15	28.30	90	141
TPR_7	Tetratricopeptide repeat	0.015	6	27.90	90	114
TPR_12	Tetratricopeptide repeat	0.00094	10	30.10	90	111
TPR_14	Tetratricopeptide repeat	0.0011	10	23.50	92	119
TPR_19	Tetratricopeptide repeat	2E-05	15	25.00	95	133
TPR_11	TPR repeat	0.00017	11	26.80	97	118
PPTA	Protein prenyltransferase alpha subunit repeat	0.3	1	20.20	99	116