c2pfam

AT1G43700.1 :

Domain Description Evalue Bits GA Start End
DUF812 Protein of unknown function (DUF812) 8.5E-05 12 30.00 145 299
HAUS-augmin3 HAUS augmin-like complex subunit 3 7.2E-05 13 27.80 193 284
bZIP_2 Basic region leucine zipper 1.2E-10 33 21.30 194 245
bZIP_Maf bZIP Maf transcription factor 5.4E-05 15 20.70 195 257
bZIP_1 bZIP transcription factor 6.5E-11 33 22.00 196 254
Atg14 Vacuolar sorting 38 and autophagy-related subunit 14 0.0008 10 33.20 199 328
Syntaxin-6_N Syntaxin 6, N-terminal 0.0028 9 24.90 200 267
UPF0242 Uncharacterised protein family (UPF0242) 0.0001 13 23.70 208 292
V_ATPase_I V-type ATPase 116kDa subunit family 0.0015 7 26.50 208 303
Cnn_1N Centrosomin N-terminal motif 1 0.35 2 28.50 210 244
ADIP Afadin- and alpha -actinin-Binding 1.1E-05 17 29.10 211 292
ATG16 Autophagy protein 16 (ATG16) 1.5E-08 26 35.00 217 287
KASH_CCD Coiled-coil region of CCDC155 or KASH 2.3E-06 19 38.60 217 291
DUF4407 Domain of unknown function (DUF4407) 0.0097 6 31.30 218 314
APG6_N Apg6 coiled-coil region 0.01 7 45.00 218 269
CLZ C-terminal leucine zipper domain of cyclic nucleotide-gated channels 0.0021 10 26.70 219 267
CENP-H Centromere protein H (CENP-H) 0.0008 11 23.00 219 286
YabA Initiation control protein YabA 2.7E-05 16 30.00 220 285
WXG100 Proteins of 100 residues with WXG 0.037 5 27.00 220 250
Cep57_MT_bd Centrosome microtubule-binding domain of Cep57 0.17 3 31.30 221 248
Spc7 Spc7 kinetochore protein 7.6E-05 13 34.00 221 286
SlyX SlyX 0.00048 12 30.00 221 270
ZapB Cell division protein ZapB 0.00037 12 31.20 221 285
Cep57_CLD_2 Centrosome localisation domain of PPC89 0.012 7 27.00 222 283
GIT_CC GIT coiled-coil Rho guanine nucleotide exchange factor 7.8E-06 17 28.30 223 258
FlaC_arch Flagella accessory protein C (FlaC) 0.0017 10 22.00 225 262
DUF1664 Protein of unknown function (DUF1664) 0.001 10 30.00 228 287
Spc24 Spc24 subunit of Ndc80 0.0022 9 22.00 229 270
Leu_zip Leucine zipper 2.5E-05 15 28.20 237 326
bZIP_1 bZIP transcription factor 0.0021 9 22.00 239 270
IFP_35_N Interferon-induced 35 kDa protein (IFP 35) N-terminus 0.0004 12 21.20 248 308
bZIP_Maf bZIP Maf transcription factor 0.15 4 20.70 248 285
Cnn_1N Centrosomin N-terminal motif 1 0.00066 11 28.50 248 287
Cep57_MT_bd Centrosome microtubule-binding domain of Cep57 0.0032 9 31.30 249 284
bZIP_2 Basic region leucine zipper 0.12 4 21.30 249 267
WXG100 Proteins of 100 residues with WXG 0.029 6 27.00 257 324
bZIP_2 Basic region leucine zipper 0.16 3 21.30 258 286
bZIP_1 bZIP transcription factor 0.012 7 22.00 258 286

341

DUF812
HAUS-augmin3
bZIP_2
bZIP_Maf
bZIP_1
Atg14
Syntaxin-6_N
UPF0242
V_ATPase_I
Cnn_1N
ADIP
ATG16
KASH_CCD
DUF4407
APG6_N
CLZ
CENP-H
YabA
WXG100
Cep57_MT_bd
Spc7
SlyX
ZapB
Cep57_CLD_2
GIT_CC
FlaC_arch
DUF1664
Spc24
Leu_zip
bZIP_1
IFP_35_N
bZIP_Maf
Cnn_1N
Cep57_MT_bd
bZIP_2
WXG100
bZIP_2
bZIP_1

References:

HAUS-augmin3

KASH_CCD

WXG100
11973144 The ESAT-6/WXG100 superfamily -- and a new Gram-positive secretion system?. Trends Microbiol 2002;10:209-212.

YabA

Spc7
15371542 The fission yeast kinetochore component Spc7 associates with the EB1 family member Mal3 and is required for kinetochore-spindle association. Mol Biol Cell 2004;15:5255-5267.

bZIP_Maf
11416124 Phosphorylation of mafa is essential for its transcriptional and biological properties. Mol Cell Biol 2001;21:4441-4452.

bZIP_2
11906833 bZIP transcription factors in Arabidopsis. Trends Plant Sci 2002;7:106-111.
12867624 bZIP proteins of human gammaherpesviruses. J Gen Virol 2003;84:1941-1949.
7780801 Transcription factors 1: bZIP proteins. Protein Profile 1995;2:101-168.

bZIP_1

CENP-H
10488063 Characterization of a novel kinetochore protein, CENP-H. J Biol Chem 1999;274:27343-27346.
11500386 CENP-H, a constitutive centromere component, is required for centromere targeting of CENP-C in vertebrate cells. EMBO J 2001;20:4603-4617.

GIT_CC

Syntaxin-6_N
12082176 Three-dimensional structure of the amino-terminal domain of syntaxin 6, a SNAP-25 C homolog. Proc Natl Acad Sci U S A. 2002;99:9184-9189.

IFP_35_N
10950963 Interferon-inducible Myc/STAT-interacting protein Nmi associates with IFP 35 into a high molecular mass complex and inhibits proteasome-mediated degradation of IFP 35. J Biol Chem 2000;275:36278-36284.

Spc24
11266451 The Ndc80p complex from Saccharomyces cerevisiae contains conserved centromere components and has a function in chromosome segregation. J Cell Biol 2001;152:349-360.

ZapB

CLZ

DUF812

Cnn_1N

ADIP
12446711 ADIP, a novel Afadin- and alpha-actinin-binding protein localized at cell-cell adherens junctions. J Biol Chem. 2003;278:4103-4111.
17486116 Gamma-tubulin complex-mediated anchoring of spindle microtubules to spindle-pole bodies requires Msd1 in fission yeast. Nat Cell Biol. 2007;9:646-653.

Atg14

APG6_N

ATG16
10406794 Apg16p is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway. EMBO J. 1999;18:3888-3896.
17012802 Expression, purification and crystallization of the Atg5-Atg16 complex essential for autophagy. Acta Crystallograph Sect F Struct Biol Cryst Commun. 2006;62:1021-1023.

DUF4407

FlaC_arch
11250034 The archaeal flagellum: a different kind of prokaryotic motility structure. FEMS Microbiol Rev 2001;25:147-174.
11717274 Characterization of flagellum gene families of methanogenic archaea and localization of novel flagellum accessory proteins. J Bacteriol 2001;183:7154-7164.

V_ATPase_I
10224039 Structure and properties of the vacuolar (H+)-ATPases. J Biol Chem 1999;274:12951-12954.
10340849 Structure and properties of the clathrin-coated vesicle and yeast vacuolar V-ATPases. J Bioenerg Biomembr 1999;31:57-65.

DUF1664

Cep57_MT_bd

Leu_zip

Cep57_CLD_2

UPF0242

SlyX

Domain	Description	Evalue	Bits	GA	Start	End
DUF812	Protein of unknown function (DUF812)	8.5E-05	12	30.00	145	299
HAUS-augmin3	HAUS augmin-like complex subunit 3	7.2E-05	13	27.80	193	284
bZIP_2	Basic region leucine zipper	1.2E-10	33	21.30	194	245
bZIP_Maf	bZIP Maf transcription factor	5.4E-05	15	20.70	195	257
bZIP_1	bZIP transcription factor	6.5E-11	33	22.00	196	254
Atg14	Vacuolar sorting 38 and autophagy-related subunit 14	0.0008	10	33.20	199	328
Syntaxin-6_N	Syntaxin 6, N-terminal	0.0028	9	24.90	200	267
UPF0242	Uncharacterised protein family (UPF0242)	0.0001	13	23.70	208	292
V_ATPase_I	V-type ATPase 116kDa subunit family	0.0015	7	26.50	208	303
Cnn_1N	Centrosomin N-terminal motif 1	0.35	2	28.50	210	244
ADIP	Afadin- and alpha -actinin-Binding	1.1E-05	17	29.10	211	292
ATG16	Autophagy protein 16 (ATG16)	1.5E-08	26	35.00	217	287
KASH_CCD	Coiled-coil region of CCDC155 or KASH	2.3E-06	19	38.60	217	291
DUF4407	Domain of unknown function (DUF4407)	0.0097	6	31.30	218	314
APG6_N	Apg6 coiled-coil region	0.01	7	45.00	218	269
CLZ	C-terminal leucine zipper domain of cyclic nucleotide-gated channels	0.0021	10	26.70	219	267
CENP-H	Centromere protein H (CENP-H)	0.0008	11	23.00	219	286
YabA	Initiation control protein YabA	2.7E-05	16	30.00	220	285
WXG100	Proteins of 100 residues with WXG	0.037	5	27.00	220	250
Cep57_MT_bd	Centrosome microtubule-binding domain of Cep57	0.17	3	31.30	221	248
Spc7	Spc7 kinetochore protein	7.6E-05	13	34.00	221	286
SlyX	SlyX	0.00048	12	30.00	221	270
ZapB	Cell division protein ZapB	0.00037	12	31.20	221	285
Cep57_CLD_2	Centrosome localisation domain of PPC89	0.012	7	27.00	222	283
GIT_CC	GIT coiled-coil Rho guanine nucleotide exchange factor	7.8E-06	17	28.30	223	258
FlaC_arch	Flagella accessory protein C (FlaC)	0.0017	10	22.00	225	262
DUF1664	Protein of unknown function (DUF1664)	0.001	10	30.00	228	287
Spc24	Spc24 subunit of Ndc80	0.0022	9	22.00	229	270
Leu_zip	Leucine zipper	2.5E-05	15	28.20	237	326
bZIP_1	bZIP transcription factor	0.0021	9	22.00	239	270
IFP_35_N	Interferon-induced 35 kDa protein (IFP 35) N-terminus	0.0004	12	21.20	248	308
bZIP_Maf	bZIP Maf transcription factor	0.15	4	20.70	248	285
Cnn_1N	Centrosomin N-terminal motif 1	0.00066	11	28.50	248	287
Cep57_MT_bd	Centrosome microtubule-binding domain of Cep57	0.0032	9	31.30	249	284
bZIP_2	Basic region leucine zipper	0.12	4	21.30	249	267
WXG100	Proteins of 100 residues with WXG	0.029	6	27.00	257	324
bZIP_2	Basic region leucine zipper	0.16	3	21.30	258	286
bZIP_1	bZIP transcription factor	0.012	7	22.00	258	286