c2pfam

AT1G01350.1 :

Domain Description Evalue Bits GA Start End
zf-CCCH_4 CCCH-type zinc finger 1 -1 24.60 29 35
zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar) 9.4E-13 38 20.50 201 226
zf-CCCH_4 CCCH-type zinc finger 2.5E-07 21 24.60 205 226
zf-CCCH_2 RNA-binding, Nab2-type zinc finger 1.8E-05 15 25.80 205 225
zf_CCCH_4 Zinc finger domain 6.4E-09 26 29.00 206 225
zf-Nse Zinc-finger of the MIZ type in Nse subunit 0.00073 10 20.70 275 314
zf-rbx1 RING-H2 zinc finger domain 0.029 5 31.00 276 315
zf-RING_2 Ring finger domain 8.8E-08 23 27.30 276 315
zf-RING_10 zinc RING finger of MSL2 4.7E-06 17 31.00 276 316
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 9.1E-12 35 27.00 276 318
zf-RING_5 zinc-RING finger domain 6.9E-09 26 27.90 277 316
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 6E-08 23 27.00 277 314
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 6.3E-08 23 21.00 277 314
zf-C3HC4_4 zinc finger of C3HC4-type, RING 2.3E-05 15 30.00 277 315
zf-RING_UBOX RING-type zinc-finger 6.4E-07 20 25.20 277 311
Prok-RING_4 Prokaryotic RING finger family 4 0.001 9 27.00 277 316
zf-CCCH_4 CCCH-type zinc finger 0.93 -1 24.60 292 300

343

zf-CCCH_4
zf-CCCH
zf-CCCH_4
zf-CCCH_2
zf_CCCH_4
zf-Nse
zf-rbx1
zf-RING_2
zf-RING_10
zf-C3HC4_3
zf-RING_5
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_4
zf-RING_UBOX
Prok-RING_4
zf-CCCH_4

References:

zf-C3HC4_4

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

Prok-RING_4

zf-C3HC4_2

zf-rbx1

zf-RING_5

zf-CCCH_4

zf-RING_2

zf-CCCH_2

zf-RING_10

zf-C3HC4_3

zf-CCCH

zf-RING_UBOX

zf-Nse
12966087 Novel essential DNA repair proteins Nse1 and Nse2 are subunits of the fission yeast Smc5-Smc6 complex. J Biol Chem 2003;278:45460-45467.

zf_CCCH_4

Domain	Description	Evalue	Bits	GA	Start	End
zf-CCCH_4	CCCH-type zinc finger	1	-1	24.60	29	35
zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	9.4E-13	38	20.50	201	226
zf-CCCH_4	CCCH-type zinc finger	2.5E-07	21	24.60	205	226
zf-CCCH_2	RNA-binding, Nab2-type zinc finger	1.8E-05	15	25.80	205	225
zf_CCCH_4	Zinc finger domain	6.4E-09	26	29.00	206	225
zf-Nse	Zinc-finger of the MIZ type in Nse subunit	0.00073	10	20.70	275	314
zf-rbx1	RING-H2 zinc finger domain	0.029	5	31.00	276	315
zf-RING_2	Ring finger domain	8.8E-08	23	27.30	276	315
zf-RING_10	zinc RING finger of MSL2	4.7E-06	17	31.00	276	316
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	9.1E-12	35	27.00	276	318
zf-RING_5	zinc-RING finger domain	6.9E-09	26	27.90	277	316
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	6E-08	23	27.00	277	314
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	6.3E-08	23	21.00	277	314
zf-C3HC4_4	zinc finger of C3HC4-type, RING	2.3E-05	15	30.00	277	315
zf-RING_UBOX	RING-type zinc-finger	6.4E-07	20	25.20	277	311
Prok-RING_4	Prokaryotic RING finger family 4	0.001	9	27.00	277	316
zf-CCCH_4	CCCH-type zinc finger	0.93	-1	24.60	292	300