c2pfam

AT1G47610.1 :

Domain Description Evalue Bits GA Start End
WD40 WD domain, G-beta repeat 5.6E-05 13 21.00 24 50
WD40_2 WD40 repeated domain 0.82 -3 22.50 24 53
PQQ_3 PQQ-like domain 0.0054 7 22.00 27 47
W_rich_C Tryptophan-rich Synechocystis species C-terminal domain 0.004 7 20.70 32 59
BBS2_Mid Ciliary BBSome complex subunit 2, middle region 0.00041 10 27.00 36 97
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.15 2 22.90 47 94
WD40 WD domain, G-beta repeat 4.3E-05 14 21.00 51 89
Nucleoporin_N Nup133 N terminal like 0.00031 9 23.70 55 108
PQQ_3 PQQ-like domain 0.16 2 22.00 63 86
Nup160 Nucleoporin Nup120/160 0.0062 4 19.20 72 94
WD40_2 WD40 repeated domain 0.074 1 22.50 74 96
W_rich_C Tryptophan-rich Synechocystis species C-terminal domain 0.53 0 20.70 77 93
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.0023 8 22.90 134 183
Nucleoporin_N Nup133 N terminal like 0.00076 8 23.70 134 182
WD40 WD domain, G-beta repeat 7.5E-07 19 21.00 134 162
Nup160 Nucleoporin Nup120/160 4.2E-05 12 19.20 140 188
PQQ_3 PQQ-like domain 0.31 1 22.00 144 159
SnoaL_4 SnoaL-like domain 0.049 3 21.80 148 168
BBS2_Mid Ciliary BBSome complex subunit 2, middle region 0.0035 7 27.00 150 212
WD40 WD domain, G-beta repeat 1.6E-07 21 21.00 168 203
PQQ_3 PQQ-like domain 0.00024 11 22.00 174 199
W_rich_C Tryptophan-rich Synechocystis species C-terminal domain 0.78 -1 20.70 182 210
WD40_2 WD40 repeated domain 2.7E-05 12 22.50 183 248
Nucleoporin_N Nup133 N terminal like 0.1 1 23.70 184 219
SnoaL_4 SnoaL-like domain 6.3E-05 12 21.80 188 251
Nucleoporin_N Nup133 N terminal like 0.073 1 23.70 222 259
WD40 WD domain, G-beta repeat 0.012 6 21.00 225 248
PQQ_3 PQQ-like domain 0.93 0 22.00 228 244
WD40_2 WD40 repeated domain 6.7E-06 14 22.50 233 318
ANAPC4_WD40 Anaphase-promoting complex subunit 4 WD40 domain 0.034 4 22.90 238 272
WD40 WD domain, G-beta repeat 0.0007 10 21.00 262 291
PQQ_3 PQQ-like domain 0.29 1 22.00 273 290
WD40 WD domain, G-beta repeat 5.8E-08 23 21.00 299 346

351

WD40
WD40_2
PQQ_3
W_rich_C
BBS2_Mid
ANAPC4_WD40
WD40
Nucleoporin_N
PQQ_3
Nup160
WD40_2
W_rich_C
ANAPC4_WD40
Nucleoporin_N
WD40
Nup160
PQQ_3
SnoaL_4
BBS2_Mid
WD40
PQQ_3
W_rich_C
WD40_2
Nucleoporin_N
SnoaL_4
Nucleoporin_N
WD40
PQQ_3
WD40_2
ANAPC4_WD40
WD40
PQQ_3
WD40

References:

BBS2_Mid

ANAPC4_WD40

PQQ_3

W_rich_C

Nup160
8557736 Nup120p: a yeast nucleoporin required for NPC distribution and mRNA transport. J Cell Biol. 1995;131:1659-1675.
11684705 Novel vertebrate nucleoporins Nup133 and Nup160 play a role in mRNA export. J Cell Biol 2001;155:339-354.
17360435 Cell-cycle-dependent phosphorylation of the nuclear pore Nup107-160 subcomplex. Proc Natl Acad Sci U S A. 2007;104:3811-3816.

WD40_2

WD40
8090199 The ancient regulatory-protein family of WD-repeat proteins. Nature 1994;371:297-300.

Nucleoporin_N
15557116 Structural and functional analysis of Nup133 domains reveals modular building blocks of the nuclear pore complex. J Cell Biol. 2004;167:591-597.

SnoaL_4

Domain	Description	Evalue	Bits	GA	Start	End
WD40	WD domain, G-beta repeat	5.6E-05	13	21.00	24	50
WD40_2	WD40 repeated domain	0.82	-3	22.50	24	53
PQQ_3	PQQ-like domain	0.0054	7	22.00	27	47
W_rich_C	Tryptophan-rich Synechocystis species C-terminal domain	0.004	7	20.70	32	59
BBS2_Mid	Ciliary BBSome complex subunit 2, middle region	0.00041	10	27.00	36	97
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.15	2	22.90	47	94
WD40	WD domain, G-beta repeat	4.3E-05	14	21.00	51	89
Nucleoporin_N	Nup133 N terminal like	0.00031	9	23.70	55	108
PQQ_3	PQQ-like domain	0.16	2	22.00	63	86
Nup160	Nucleoporin Nup120/160	0.0062	4	19.20	72	94
WD40_2	WD40 repeated domain	0.074	1	22.50	74	96
W_rich_C	Tryptophan-rich Synechocystis species C-terminal domain	0.53	0	20.70	77	93
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.0023	8	22.90	134	183
Nucleoporin_N	Nup133 N terminal like	0.00076	8	23.70	134	182
WD40	WD domain, G-beta repeat	7.5E-07	19	21.00	134	162
Nup160	Nucleoporin Nup120/160	4.2E-05	12	19.20	140	188
PQQ_3	PQQ-like domain	0.31	1	22.00	144	159
SnoaL_4	SnoaL-like domain	0.049	3	21.80	148	168
BBS2_Mid	Ciliary BBSome complex subunit 2, middle region	0.0035	7	27.00	150	212
WD40	WD domain, G-beta repeat	1.6E-07	21	21.00	168	203
PQQ_3	PQQ-like domain	0.00024	11	22.00	174	199
W_rich_C	Tryptophan-rich Synechocystis species C-terminal domain	0.78	-1	20.70	182	210
WD40_2	WD40 repeated domain	2.7E-05	12	22.50	183	248
Nucleoporin_N	Nup133 N terminal like	0.1	1	23.70	184	219
SnoaL_4	SnoaL-like domain	6.3E-05	12	21.80	188	251
Nucleoporin_N	Nup133 N terminal like	0.073	1	23.70	222	259
WD40	WD domain, G-beta repeat	0.012	6	21.00	225	248
PQQ_3	PQQ-like domain	0.93	0	22.00	228	244
WD40_2	WD40 repeated domain	6.7E-06	14	22.50	233	318
ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	0.034	4	22.90	238	272
WD40	WD domain, G-beta repeat	0.0007	10	21.00	262	291
PQQ_3	PQQ-like domain	0.29	1	22.00	273	290
WD40	WD domain, G-beta repeat	5.8E-08	23	21.00	299	346