c2pfam

AT1G48030.1 :

Domain Description Evalue Bits GA Start End
AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain 3E-05 14 20.30 40 76
Thi4 Thi4 family 1.6E-07 21 20.00 43 91
FAD_binding_3 FAD binding domain 2.1E-06 17 20.10 44 76
HI0933_like HI0933-like protein 1.6E-07 21 20.30 45 79
DAO FAD dependent oxidoreductase 7.8E-06 16 24.70 45 81
FAD_oxidored FAD dependent oxidoreductase 1.1E-12 38 27.00 45 83
FAD_binding_2 FAD binding domain 1.2E-09 28 20.40 45 81
Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase 0 236 22.80 45 369
GIDA Glucose inhibited division protein A 4.5E-14 43 20.00 45 190
Lycopene_cycl Lycopene cyclase protein 2.9E-05 14 23.40 45 185
XdhC_C XdhC Rossmann domain 0.028 5 29.70 46 79
Pyr_redox Pyridine nucleotide-disulphide oxidoreductase 3E-05 15 22.00 46 79
Pyr_redox_3 Pyridine nucleotide-disulphide oxidoreductase 6.8E-06 16 30.00 47 79
NAD_binding_8 NAD(P)-binding Rossmann-like domain 1.5E-08 25 21.90 48 85
3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 0.1 3 20.90 102 149
DAO FAD dependent oxidoreductase 0.37 1 24.70 135 191
Amino_oxidase Flavin containing amine oxidoreductase 0.062 3 19.80 153 188
K_oxygenase L-lysine 6-monooxygenase (NADPH-requiring) 0.0016 8 21.00 162 228
HI0933_like HI0933-like protein 0.83 -2 20.30 165 192
Pyr_redox_3 Pyridine nucleotide-disulphide oxidoreductase 1.7E-12 37 30.00 168 353
AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain 0.00058 10 20.30 214 270
Thi4 Thi4 family 0.37 0 20.00 215 244
Pyr_redox Pyridine nucleotide-disulphide oxidoreductase 3.7E-23 72 22.00 216 290
HI0933_like HI0933-like protein 0.058 2 20.30 216 246
UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3.5E-06 17 20.50 216 265
DAO FAD dependent oxidoreductase 0.071 3 24.70 217 244
GIDA Glucose inhibited division protein A 0.034 3 20.00 217 244
Lycopene_cycl Lycopene cyclase protein 0.11 2 23.40 217 247
XdhC_C XdhC Rossmann domain 0.031 5 29.70 217 245
FAD_binding_3 FAD binding domain 0.032 4 20.10 218 249
3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 1.7E-06 18 20.90 218 272
NAD_binding_8 NAD(P)-binding Rossmann-like domain 0.16 3 21.90 219 244
HI0933_like HI0933-like protein 0.031 3 20.30 257 313
Lycopene_cycl Lycopene cyclase protein 0.45 0 23.40 259 313
DAO FAD dependent oxidoreductase 0.032 4 24.70 261 313
K_oxygenase L-lysine 6-monooxygenase (NADPH-requiring) 0.00023 11 21.00 262 313
Amino_oxidase Flavin containing amine oxidoreductase 0.0017 8 19.80 264 311
Thi4 Thi4 family 0.28 1 20.00 301 324
FAD_binding_2 FAD binding domain 0.001 9 20.40 326 358
Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 0 138 25.00 388 497
Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase 1 -1 22.80 405 444

507

AlaDh_PNT_C
Thi4
FAD_binding_3
HI0933_like
DAO
FAD_oxidored
FAD_binding_2
Pyr_redox_2
GIDA
Lycopene_cycl
XdhC_C
Pyr_redox
Pyr_redox_3
NAD_binding_8
3HCDH_N
DAO
Amino_oxidase
K_oxygenase
HI0933_like
Pyr_redox_3
AlaDh_PNT_C
Thi4
Pyr_redox
HI0933_like
UDPG_MGDP_dh_N
DAO
GIDA
Lycopene_cycl
XdhC_C
FAD_binding_3
3HCDH_N
NAD_binding_8
HI0933_like
Lycopene_cycl
DAO
K_oxygenase
Amino_oxidase
Thi4
FAD_binding_2
Pyr_redox_dim
Pyr_redox_2

References:

FAD_binding_2
8061609 Structure of glutathione reductase from Escherichia coli at 1.86 A resolution: comparison with the enzyme from human erythrocytes. Protein Sci 1994;3:799-809.

XdhC_C

3HCDH_N
3479790 Structure of L-3-hydroxyacyl-coenzyme A dehydrogenase: preliminary chain tracing at 2.8-A resolution. Proc Natl Acad Sci U S A 1987;84:8262-8266.

Lycopene_cycl
8837512 Functional analysis of the beta and epsilon lycopene cyclase enzymes of Arabidopsis reveals a mechanism for control of cyclic carotenoid formation. Plant Cell 1996;8:1613-1626.
11226339 One ring or two? Determination of ring number in carotenoids by lycopene epsilon-cyclases. Proc Natl Acad Sci U S A 2001;98:2905-2910.

Amino_oxidase
9598979 Maize polyamine oxidase: primary structure from protein and cDNA sequencing. FEBS Lett 1998;426:62-66.
9162023 A key amino acid responsible for substrate selectivity of monoamine oxidase A and B. J Biol Chem 1997;272:14033-14036.
7770050 Cloning, sequencing and heterologous expression of the monoamine oxidase gene from Aspergillus niger. Mol Gen Genet 1995;247:430-438.

Thi4
7961415 Cloning, nucleotide sequence, and regulation of Schizosaccharomyces pombe thi4, a thiamine biosynthetic gene. J Bacteriol 1994;176:6631-6635.

FAD_binding_3
1409567 Crystal structure of the reduced form of p-hydroxybenzoate hydroxylase refined at 2.3A resolution. Proteins 1992;14:178-190.

Pyr_redox_2
8805537 Protein-protein interactions in the pyruvate dehydrogenase multienzyme complex: dihydrolipoamide dehydrogenase complexed with the binding domain of dihydrolipoamide acetyltransferase. Structure 1996;4:277-286.

DAO
9153426 Active site plasticity in D-amino acid oxidase: a crystallographic analysis. Biochemistry 1997;36:5853-5860.

UDPG_MGDP_dh_N
2470755 Purification and characterization of guanosine diphospho-D-mannose dehydrogenase. A key enzyme in the biosynthesis of alginate by Pseudomonas aeruginosa. J Biol Chem 1989;264:9380-9385.
9013585 Properties and kinetic analysis of UDP-glucose dehydrogenase from group A streptococci. Irreversible inhibition by UDP-chloroacetol. J Biol Chem 1997;272:3416-3422.

Pyr_redox
8805537 Protein-protein interactions in the pyruvate dehydrogenase multienzyme complex: dihydrolipoamide dehydrogenase complexed with the binding domain of dihydrolipoamide acetyltransferase. Structure 1996;4:277-286.

HI0933_like

Pyr_redox_3

FAD_oxidored

AlaDh_PNT_C
11354603 Lysine metabolism in higher plants. Amino Acids 2001;20:261-279.

K_oxygenase

GIDA

Pyr_redox_dim
8771196 The crystal structure of trypanothione reductase from the human pathogen Trypanosoma cruzi at 2.3 A resolution. Protein Sci 1996;5:52-61.

NAD_binding_8

Domain	Description	Evalue	Bits	GA	Start	End
AlaDh_PNT_C	Alanine dehydrogenase/PNT, C-terminal domain	3E-05	14	20.30	40	76
Thi4	Thi4 family	1.6E-07	21	20.00	43	91
FAD_binding_3	FAD binding domain	2.1E-06	17	20.10	44	76
HI0933_like	HI0933-like protein	1.6E-07	21	20.30	45	79
DAO	FAD dependent oxidoreductase	7.8E-06	16	24.70	45	81
FAD_oxidored	FAD dependent oxidoreductase	1.1E-12	38	27.00	45	83
FAD_binding_2	FAD binding domain	1.2E-09	28	20.40	45	81
Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	0	236	22.80	45	369
GIDA	Glucose inhibited division protein A	4.5E-14	43	20.00	45	190
Lycopene_cycl	Lycopene cyclase protein	2.9E-05	14	23.40	45	185
XdhC_C	XdhC Rossmann domain	0.028	5	29.70	46	79
Pyr_redox	Pyridine nucleotide-disulphide oxidoreductase	3E-05	15	22.00	46	79
Pyr_redox_3	Pyridine nucleotide-disulphide oxidoreductase	6.8E-06	16	30.00	47	79
NAD_binding_8	NAD(P)-binding Rossmann-like domain	1.5E-08	25	21.90	48	85
3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	0.1	3	20.90	102	149
DAO	FAD dependent oxidoreductase	0.37	1	24.70	135	191
Amino_oxidase	Flavin containing amine oxidoreductase	0.062	3	19.80	153	188
K_oxygenase	L-lysine 6-monooxygenase (NADPH-requiring)	0.0016	8	21.00	162	228
HI0933_like	HI0933-like protein	0.83	-2	20.30	165	192
Pyr_redox_3	Pyridine nucleotide-disulphide oxidoreductase	1.7E-12	37	30.00	168	353
AlaDh_PNT_C	Alanine dehydrogenase/PNT, C-terminal domain	0.00058	10	20.30	214	270
Thi4	Thi4 family	0.37	0	20.00	215	244
Pyr_redox	Pyridine nucleotide-disulphide oxidoreductase	3.7E-23	72	22.00	216	290
HI0933_like	HI0933-like protein	0.058	2	20.30	216	246
UDPG_MGDP_dh_N	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain	3.5E-06	17	20.50	216	265
DAO	FAD dependent oxidoreductase	0.071	3	24.70	217	244
GIDA	Glucose inhibited division protein A	0.034	3	20.00	217	244
Lycopene_cycl	Lycopene cyclase protein	0.11	2	23.40	217	247
XdhC_C	XdhC Rossmann domain	0.031	5	29.70	217	245
FAD_binding_3	FAD binding domain	0.032	4	20.10	218	249
3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	1.7E-06	18	20.90	218	272
NAD_binding_8	NAD(P)-binding Rossmann-like domain	0.16	3	21.90	219	244
HI0933_like	HI0933-like protein	0.031	3	20.30	257	313
Lycopene_cycl	Lycopene cyclase protein	0.45	0	23.40	259	313
DAO	FAD dependent oxidoreductase	0.032	4	24.70	261	313
K_oxygenase	L-lysine 6-monooxygenase (NADPH-requiring)	0.00023	11	21.00	262	313
Amino_oxidase	Flavin containing amine oxidoreductase	0.0017	8	19.80	264	311
Thi4	Thi4 family	0.28	1	20.00	301	324
FAD_binding_2	FAD binding domain	0.001	9	20.40	326	358
Pyr_redox_dim	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain	0	138	25.00	388	497
Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	1	-1	22.80	405	444