c2pfam

AT1G48410.1 :

Domain Description Evalue Bits GA Start End
Gly-rich_Ago1 Glycine-rich region of argonaut 5.3E-27 84 25.00 75 172
ArgoN N-terminal domain of argonaute 1E-35 112 30.90 190 325
ArgoL1 Argonaute linker 1 domain 2.4E-25 77 20.90 335 385
PAZ PAZ domain 1.5E-30 95 20.80 395 516
DUF3577 Protein of unknown function (DUF3577) 0.00019 10 25.00 503 572
ArgoL2 Argonaute linker 2 domain 2.9E-19 58 33.30 527 573
ArgoMid Mid domain of argonaute 8.6E-13 38 27.50 584 659
Piwi Piwi domain 0 381 19.90 677 996
DUF3577 Protein of unknown function (DUF3577) 0.55 -1 25.00 771 816

1048

Gly-rich_Ago1
ArgoN
ArgoL1
PAZ
DUF3577
ArgoL2
ArgoMid
Piwi
DUF3577

References:

ArgoL2

ArgoN

ArgoMid

PAZ
11050429 Domains in gene silencing and cell differentiation proteins: the novel PAZ domain and redefinition of the Piwi domain. Trends Biochem Sci 2000;25:481-482.
14625589 The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes. Nat Struct Biol 2003;10:1026-1032.
14615802 Structure and conserved RNA binding of the PAZ domain. Nature 2003;426:468-474.
14615801 Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain. Nature 2003;426:465-469.

ArgoL1

DUF3577

Piwi
11050429 Domains in gene silencing and cell differentiation proteins: the novel PAZ domain and redefinition of the Piwi domain. Trends Biochem Sci 2000;25:481-482.
15284453 Crystal structure of Argonaute and its implications for RISC slicer activity. Science 2004;305:1434-1437.

Gly-rich_Ago1

Domain	Description	Evalue	Bits	GA	Start	End
Gly-rich_Ago1	Glycine-rich region of argonaut	5.3E-27	84	25.00	75	172
ArgoN	N-terminal domain of argonaute	1E-35	112	30.90	190	325
ArgoL1	Argonaute linker 1 domain	2.4E-25	77	20.90	335	385
PAZ	PAZ domain	1.5E-30	95	20.80	395	516
DUF3577	Protein of unknown function (DUF3577)	0.00019	10	25.00	503	572
ArgoL2	Argonaute linker 2 domain	2.9E-19	58	33.30	527	573
ArgoMid	Mid domain of argonaute	8.6E-13	38	27.50	584	659
Piwi	Piwi domain	0	381	19.90	677	996
DUF3577	Protein of unknown function (DUF3577)	0.55	-1	25.00	771	816