AT1G04850.1 :
Domain
Description
Evalue
Bits
GA
Start
End
zf-C2H2_2
C2H2 type zinc-finger (2 copies)
0.00064
9
26.90
6
37
zf-C2H2_2
C2H2 type zinc-finger (2 copies)
0.002
7
26.90
41
73
UBA
UBA/TS-N domain
1.9E-12
35
21.10
112
147
PUB
PUB domain
0.38
-1
20.30
115
127
MCM3AP_GANP
MCM3AP domain of GANP
1.7E-05
12
25.00
183
311
Gypsy
Gypsy protein
1E-05
13
20.30
299
352
PUB
PUB domain
1.1E-27
84
20.30
320
391
413
zf-C2H2_2
zf-C2H2_2
UBA
PUB
MCM3AP_GANP
Gypsy
PUB
References:
PUB
16807242
The PUB domain functions as a p97 binding module in human peptide N-glycanase.
J Biol Chem. 2006;281:25502-25508.
MCM3AP_GANP
zf-C2H2_2
UBA
9846873
Structure of a human DNA repair protein UBA domain that interacts with HIV-1 Vpr.
Nat Struct Biol 1998;5:1042-1047.
10413400
Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell.
Genome Res 1999;9:608-628.
8596629
The structure of the Escherichia coli EF-Tu.EF-Ts complex at 2.5 A resolution.
Nature 1996;379:511-518.
Gypsy
11805056
Comparative and functional studies of Drosophila species invasion by the gypsy endogenous retrovirus.
Genetics 2002;160:201-209.