c2pfam

AT1G49760.1 :

Domain Description Evalue Bits GA Start End
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.00014 11 27.00 30 121
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.4E-20 62 20.70 47 117
RRM_7 RNA recognition motif 0.26 2 27.00 47 73
RRM_occluded Occluded RNA-recognition motif 0.061 3 30.00 51 118
RRM_3 RNA binding motif 0.78 0 21.30 58 106
Nup35_RRM Nup53/35/40-type RNA recognition motif 0.00038 10 20.90 59 116
Nup35_RRM_2 Nup53/35/40-type RNA recognition motif 0.052 4 27.00 88 103
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7E-23 70 20.70 135 203
RRM_7 RNA recognition motif 0.0032 8 27.00 135 191
RRM_3 RNA binding motif 0.001 9 21.30 137 196
DUF4523 Protein of unknown function (DUF4523) 0.016 5 27.00 137 163
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.035 4 27.00 145 205
Nup35_RRM Nup53/35/40-type RNA recognition motif 0.0097 6 20.90 149 202
Nup35_RRM_2 Nup53/35/40-type RNA recognition motif 0.77 0 27.00 153 189
OB_RNB Ribonuclease B OB domain 0.005 7 20.20 170 183
RRM_7 RNA recognition motif 0.21 2 27.00 226 296
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.7E-26 81 20.70 226 294
RRM_occluded Occluded RNA-recognition motif 6.9E-05 13 30.00 228 299
DUF4523 Protein of unknown function (DUF4523) 0.36 0 27.00 229 289
RRM_3 RNA binding motif 0.037 4 21.30 231 321
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.21 1 27.00 240 300
Nup35_RRM_2 Nup53/35/40-type RNA recognition motif 0.02 5 27.00 261 281
OB_RNB Ribonuclease B OB domain 0.006 6 20.20 261 276
SET_assoc Histone lysine methyltransferase SET associated 0.0074 6 21.00 268 289
RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.6E-05 14 27.00 316 406
RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.9E-24 74 20.70 329 395
RRM_occluded Occluded RNA-recognition motif 0.0024 8 30.00 330 397
RRM_3 RNA binding motif 0.12 3 21.30 331 390
DUF4523 Protein of unknown function (DUF4523) 0.11 2 27.00 331 390
Nup35_RRM Nup53/35/40-type RNA recognition motif 0.0068 6 20.90 342 393
Nup35_RRM_2 Nup53/35/40-type RNA recognition motif 0.0019 8 27.00 342 383
Limkain-b1 Limkain b1 0.0013 9 20.80 355 405
SET_assoc Histone lysine methyltransferase SET associated 0.00042 10 21.00 371 397
SUIM_assoc Unstructured region C-term to UIM in Ataxin3 0.00024 11 34.10 488 503
Spt20 Spt20 family 0.012 5 32.00 488 525
PABP Poly-adenylate binding protein, unique domain 2.5E-30 94 21.00 580 645

671

RRM_5
RRM_1
RRM_7
RRM_occluded
RRM_3
Nup35_RRM
Nup35_RRM_2
RRM_1
RRM_7
RRM_3
DUF4523
RRM_5
Nup35_RRM
Nup35_RRM_2
OB_RNB
RRM_7
RRM_1
RRM_occluded
DUF4523
RRM_3
RRM_5
Nup35_RRM_2
OB_RNB
SET_assoc
RRM_5
RRM_1
RRM_occluded
RRM_3
DUF4523
Nup35_RRM
Nup35_RRM_2
Limkain-b1
SET_assoc
SUIM_assoc
Spt20
PABP

References:

Spt20
19114550 The human SPT20-containing SAGA complex plays a direct role in the regulation of endoplasmic reticulum stress-induced genes. Mol Cell Biol. 2009;29:1649-1660.

RRM_1
8290338 Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors. Nucleic Acid Res 1993;21:5803-5816.

Limkain-b1
15932519 Limkain b1, a novel human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Clin Exp Immunol. 2005;140:556-563.

OB_RNB

DUF4523

Nup35_RRM_2

Nup35_RRM

SUIM_assoc

RRM_occluded

SET_assoc
12389037 Structure of the SET domain histone lysine methyltransferase Clr4. Nat Struct Biol 2002;0:0-0.
12575990 Structure of SET domain proteins: a new twist on histone methylation. Trends Biochem Sci 2003;28:59-62.

RRM_7

RRM_5

PABP
12844354 Poly(A)-binding proteins: multifunctional scaffolds for the post-transcriptional control of gene expression. Genome Biol 2003;4:223.

RRM_3
12842046 Structure of the C-terminal domain of human La protein reveals a novel RNA recognition motif coupled to a helical nuclear retention element. Structure. 2003;11:833-843.

Domain	Description	Evalue	Bits	GA	Start	End
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	0.00014	11	27.00	30	121
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	2.4E-20	62	20.70	47	117
RRM_7	RNA recognition motif	0.26	2	27.00	47	73
RRM_occluded	Occluded RNA-recognition motif	0.061	3	30.00	51	118
RRM_3	RNA binding motif	0.78	0	21.30	58	106
Nup35_RRM	Nup53/35/40-type RNA recognition motif	0.00038	10	20.90	59	116
Nup35_RRM_2	Nup53/35/40-type RNA recognition motif	0.052	4	27.00	88	103
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	7E-23	70	20.70	135	203
RRM_7	RNA recognition motif	0.0032	8	27.00	135	191
RRM_3	RNA binding motif	0.001	9	21.30	137	196
DUF4523	Protein of unknown function (DUF4523)	0.016	5	27.00	137	163
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	0.035	4	27.00	145	205
Nup35_RRM	Nup53/35/40-type RNA recognition motif	0.0097	6	20.90	149	202
Nup35_RRM_2	Nup53/35/40-type RNA recognition motif	0.77	0	27.00	153	189
OB_RNB	Ribonuclease B OB domain	0.005	7	20.20	170	183
RRM_7	RNA recognition motif	0.21	2	27.00	226	296
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4.7E-26	81	20.70	226	294
RRM_occluded	Occluded RNA-recognition motif	6.9E-05	13	30.00	228	299
DUF4523	Protein of unknown function (DUF4523)	0.36	0	27.00	229	289
RRM_3	RNA binding motif	0.037	4	21.30	231	321
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	0.21	1	27.00	240	300
Nup35_RRM_2	Nup53/35/40-type RNA recognition motif	0.02	5	27.00	261	281
OB_RNB	Ribonuclease B OB domain	0.006	6	20.20	261	276
SET_assoc	Histone lysine methyltransferase SET associated	0.0074	6	21.00	268	289
RRM_5	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	1.6E-05	14	27.00	316	406
RRM_1	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	5.9E-24	74	20.70	329	395
RRM_occluded	Occluded RNA-recognition motif	0.0024	8	30.00	330	397
RRM_3	RNA binding motif	0.12	3	21.30	331	390
DUF4523	Protein of unknown function (DUF4523)	0.11	2	27.00	331	390
Nup35_RRM	Nup53/35/40-type RNA recognition motif	0.0068	6	20.90	342	393
Nup35_RRM_2	Nup53/35/40-type RNA recognition motif	0.0019	8	27.00	342	383
Limkain-b1	Limkain b1	0.0013	9	20.80	355	405
SET_assoc	Histone lysine methyltransferase SET associated	0.00042	10	21.00	371	397
SUIM_assoc	Unstructured region C-term to UIM in Ataxin3	0.00024	11	34.10	488	503
Spt20	Spt20 family	0.012	5	32.00	488	525
PABP	Poly-adenylate binding protein, unique domain	2.5E-30	94	21.00	580	645