c2pfam

AT1G49850.1 :

Domain Description Evalue Bits GA Start End
SelP_N Selenoprotein P, N terminal region 0.0012 8 20.30 12 52
Zn_ribbon_17 Zinc-ribbon, C4HC2 type 4.8E-05 13 27.30 199 241
zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger) 4.4E-07 20 27.00 201 248
zf-rbx1 RING-H2 zinc finger domain 1.5E-07 22 31.00 202 244
zf-RING_2 Ring finger domain 2.3E-15 47 27.30 202 244
zf-RING_11 RING-like zinc finger 1.5E-14 43 27.00 202 230
FANCL_C FANCL C-terminal domain 0.00087 9 20.70 202 239
PHD PHD-finger 8.2E-05 12 27.90 203 235
zf-C3HC4_2 Zinc finger, C3HC4 type (RING finger) 1.7E-10 30 27.00 203 243
zf-RING_5 zinc-RING finger domain 9.5E-09 25 27.90 203 245
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 1.5E-07 21 21.00 203 243
zf-RING_UBOX RING-type zinc-finger 1.9E-07 21 25.20 203 241
zf-ANAPC11 Anaphase-promoting complex subunit 11 RING-H2 finger 2.3E-05 14 21.40 214 247

250

SelP_N
Zn_ribbon_17
zf-C3HC4_3
zf-rbx1
zf-RING_2
zf-RING_11
FANCL_C
PHD
zf-C3HC4_2
zf-RING_5
zf-C3HC4
zf-RING_UBOX
zf-ANAPC11

References:

FANCL_C
16474167 The WD40 repeats of FANCL are required for Fanconi anemia core complex assembly. J Biol Chem. 2006;281:10896-10905.

zf-C3HC4
8804826 The RING finger domain: a recent example of a sequence-structure family. Curr Opin Struct Biol 1996;6:395-401.
10500182 RING fingers mediate ubiquitin-conjugating enzyme (E2)-dependent ubiquitination. Proc Natl Acad Sci U S A 1999;96:11364-11369.

zf-ANAPC11

SelP_N
10775431 Selenoprotein P: properties, functions, and regulation. Arch Biochem Biophys 2000;376:433-438.
11168591 Selenium metabolism in zebrafish: multiplicity of selenoprotein genes and expression of a protein containing 17 selenocysteine residues. Genes Cells 2000;5:1049-1060.
9358058 Analysis of bovine selenoprotein P-like protein gene and availability of metal responsive element (MRE) located in its promoter. Gene 1997;199:211-217.

zf-RING_UBOX

zf-RING_5

zf-RING_2

zf-rbx1

zf-RING_11

zf-C3HC4_3

zf-C3HC4_2

Zn_ribbon_17

PHD
7701562 The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 1995;20:56-59.
11124022 Structure of the PHD zinc finger from human williams-beuren syndrome transcription factor J Mol Biol 2000;304:723-729.
17142463 Proteome-wide analysis in S. cerevisiae identifies several PHD fingers as novel direct and selective binding modules of histone H3 methylated at either lysine 4 or lysine 36. J Biol Chem. 2006; [Epub ahead of print]

Domain	Description	Evalue	Bits	GA	Start	End
SelP_N	Selenoprotein P, N terminal region	0.0012	8	20.30	12	52
Zn_ribbon_17	Zinc-ribbon, C4HC2 type	4.8E-05	13	27.30	199	241
zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	4.4E-07	20	27.00	201	248
zf-rbx1	RING-H2 zinc finger domain	1.5E-07	22	31.00	202	244
zf-RING_2	Ring finger domain	2.3E-15	47	27.30	202	244
zf-RING_11	RING-like zinc finger	1.5E-14	43	27.00	202	230
FANCL_C	FANCL C-terminal domain	0.00087	9	20.70	202	239
PHD	PHD-finger	8.2E-05	12	27.90	203	235
zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	1.7E-10	30	27.00	203	243
zf-RING_5	zinc-RING finger domain	9.5E-09	25	27.90	203	245
zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	1.5E-07	21	21.00	203	243
zf-RING_UBOX	RING-type zinc-finger	1.9E-07	21	25.20	203	241
zf-ANAPC11	Anaphase-promoting complex subunit 11 RING-H2 finger	2.3E-05	14	21.40	214	247