c2pfam

AT1G01040.1 :

Domain Description Evalue Bits GA Start End
DEAD DEAD/DEAH box helicase 1.7E-13 40 20.60 252 413
ResIII Type III restriction enzyme, res subunit 1.1E-16 51 20.90 254 415
Helicase_C Helicase conserved C-terminal domain 5E-20 61 20.90 648 765
Dicer_dimer Dicer dimerisation domain 7.4E-24 73 22.60 840 928
dsrm Double-stranded RNA binding motif 0.0026 8 21.00 852 915
PAZ PAZ domain 1.7E-29 92 20.80 1199 1338
Ribonucleas_3_3 Ribonuclease-III-like 3.9E-10 29 35.00 1363 1433
Ribonuclease_3 RNase3 domain 2.1E-32 101 21.50 1375 1518
Ribonucleas_3_3 Ribonuclease-III-like 0.0037 7 35.00 1499 1527
Ribonucleas_3_3 Ribonuclease-III-like 4.9E-18 55 35.00 1573 1712
Ribonuclease_3 RNase3 domain 3.4E-28 88 21.50 1594 1707
DEAD DEAD/DEAH box helicase 0.13 1 20.60 1706 1752
dsrm Double-stranded RNA binding motif 2.6E-07 21 21.00 1734 1794
DND1_DSRM double strand RNA binding domain from DEAD END PROTEIN 1 0.27 1 25.70 1774 1795
Dicer_dimer Dicer dimerisation domain 0.28 1 22.60 1775 1797
DND1_DSRM double strand RNA binding domain from DEAD END PROTEIN 1 7.5E-18 54 25.70 1832 1904
dsrm Double-stranded RNA binding motif 4E-13 39 21.00 1834 1904
Dicer_dimer Dicer dimerisation domain 0.024 4 22.60 1878 1905

1909

DEAD
ResIII
Helicase_C
Dicer_dimer
dsrm
PAZ
Ribonucleas_3_3
Ribonuclease_3
Ribonucleas_3_3
Ribonucleas_3_3
Ribonuclease_3
DEAD
dsrm
DND1_DSRM
Dicer_dimer
DND1_DSRM
dsrm
Dicer_dimer

References:

Ribonucleas_3_3

dsrm
8036511 Conserved structures and diversity of functions of RNA-binding proteins. Science 1994;265:615-621.

ResIII

DEAD
10322435 Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and related families. Trends Biochem Sci 1999;24:192-198.
9862990 The DEAD box RNA helicase family in Arabidopsis thaliana. Nucleic Acids Res 1999;27:628-636.

DND1_DSRM

PAZ
11050429 Domains in gene silencing and cell differentiation proteins: the novel PAZ domain and redefinition of the Piwi domain. Trends Biochem Sci 2000;25:481-482.
14625589 The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes. Nat Struct Biol 2003;10:1026-1032.
14615802 Structure and conserved RNA binding of the PAZ domain. Nature 2003;426:468-474.
14615801 Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain. Nature 2003;426:465-469.

Helicase_C

Dicer_dimer

Ribonuclease_3

Domain	Description	Evalue	Bits	GA	Start	End
DEAD	DEAD/DEAH box helicase	1.7E-13	40	20.60	252	413
ResIII	Type III restriction enzyme, res subunit	1.1E-16	51	20.90	254	415
Helicase_C	Helicase conserved C-terminal domain	5E-20	61	20.90	648	765
Dicer_dimer	Dicer dimerisation domain	7.4E-24	73	22.60	840	928
dsrm	Double-stranded RNA binding motif	0.0026	8	21.00	852	915
PAZ	PAZ domain	1.7E-29	92	20.80	1199	1338
Ribonucleas_3_3	Ribonuclease-III-like	3.9E-10	29	35.00	1363	1433
Ribonuclease_3	RNase3 domain	2.1E-32	101	21.50	1375	1518
Ribonucleas_3_3	Ribonuclease-III-like	0.0037	7	35.00	1499	1527
Ribonucleas_3_3	Ribonuclease-III-like	4.9E-18	55	35.00	1573	1712
Ribonuclease_3	RNase3 domain	3.4E-28	88	21.50	1594	1707
DEAD	DEAD/DEAH box helicase	0.13	1	20.60	1706	1752
dsrm	Double-stranded RNA binding motif	2.6E-07	21	21.00	1734	1794
DND1_DSRM	double strand RNA binding domain from DEAD END PROTEIN 1	0.27	1	25.70	1774	1795
Dicer_dimer	Dicer dimerisation domain	0.28	1	22.60	1775	1797
DND1_DSRM	double strand RNA binding domain from DEAD END PROTEIN 1	7.5E-18	54	25.70	1832	1904
dsrm	Double-stranded RNA binding motif	4E-13	39	21.00	1834	1904
Dicer_dimer	Dicer dimerisation domain	0.024	4	22.60	1878	1905